RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 PRDM6Q9NQX0 595 aa10.74□□□□□ -0.69
SPG11-213ENST00000558988 STRN4Q9NRL3 753 aa10.74□□□□□ -0.69
SPG11-213ENST00000558988 LRPPRCP42704 1394 aaKnown RBP10.74□□□□□ -0.69
SPG11-213ENST00000558988 PIK3C2GO75747 1445 aa10.74□□□□□ -0.69
SPG11-213ENST00000558988 C1orf216Q8TAB5 229 aa10.73□□□□□ -0.69
SPG11-213ENST00000558988 NGLY1Q96IV0 654 aa10.73□□□□□ -0.69
SPG11-213ENST00000558988 STARD13Q9Y3M8 1113 aa10.73□□□□□ -0.69
SPG11-213ENST00000558988 FOXO3O43524 673 aa10.72□□□□□ -0.69
SPG11-213ENST00000558988 RXRBP28702 533 aa10.72□□□□□ -0.69
SPG11-213ENST00000558988 SYT9Q86SS6 491 aa10.72□□□□□ -0.69
SPG11-213ENST00000558988 AIDAQ96BJ3 306 aa10.72□□□□□ -0.69
SPG11-213ENST00000558988 YTHDC2Q9H6S0 1430 aaKnown RBP10.72□□□□□ -0.69
SPG11-213ENST00000558988 CDC42BPGQ6DT37 1551 aa10.72□□□□□ -0.69
SPG11-213ENST00000558988 STAU1O95793 577 aaKnown RBP10.71□□□□□ -0.69
SPG11-213ENST00000558988 MYCP01106 439 aaPredicted RBP10.71□□□□□ -0.69
SPG11-213ENST00000558988 NID1P14543 1247 aa10.71□□□□□ -0.69
SPG11-213ENST00000558988 TLR1Q15399 786 aa10.71□□□□□ -0.69
SPG11-213ENST00000558988 PRAG1Q86YV5 1406 aa10.71□□□□□ -0.69
SPG11-213ENST00000558988 CDCA7Q9BWT1 371 aaPredicted RBP10.71□□□□□ -0.69
SPG11-213ENST00000558988 TECPR2O15040 1411 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 DHX57Q6P158 1386 aaKnown RBP10.7□□□□□ -0.7
SPG11-213ENST00000558988 ABCC11Q96J66 1382 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 NPHP3Q7Z494 1330 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 ACIN1Q9UKV3 1341 aaKnown RBP10.7□□□□□ -0.7
SPG11-213ENST00000558988 ALBP02768 609 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 ARSJQ5FYB0 599 aaPredicted RBP10.7□□□□□ -0.7
SPG11-213ENST00000558988 MICALL1Q8N3F8 863 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 DCAF11Q8TEB1 546 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 MARK1Q9P0L2 795 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 POGKQ9P215 609 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 KNDC1Q76NI1 1749 aa10.7□□□□□ -0.7
SPG11-213ENST00000558988 MYOM2P54296 1465 aa10.69□□□□□ -0.7
SPG11-213ENST00000558988 FAM157BP0CG42 384 aa10.69□□□□□ -0.7
SPG11-213ENST00000558988 MCCD1P59942 119 aaPredicted RBP10.69□□□□□ -0.7
SPG11-213ENST00000558988 PRAM1Q96QH2 718 aa10.69□□□□□ -0.7
SPG11-213ENST00000558988 C14orf93Q9H972 538 aaKnown RBP10.69□□□□□ -0.7
SPG11-213ENST00000558988 QTRT2Q9H974 415 aaKnown RBP10.69□□□□□ -0.7
SPG11-213ENST00000558988 HIRIP3Q9BW71 556 aaPredicted RBP10.68□□□□□ -0.7
SPG11-213ENST00000558988 ETNK1Q9HBU6 452 aa10.68□□□□□ -0.7
SPG11-213ENST00000558988 PCMTD2Q9NV79 361 aa10.68□□□□□ -0.7
SPG11-213ENST00000558988 TRAK1Q9UPV9 953 aa10.68□□□□□ -0.7
SPG11-213ENST00000558988 FMN2Q9NZ56 1722 aa10.67□□□□□ -0.7
SPG11-213ENST00000558988 LAMC1P11047 1609 aa10.67□□□□□ -0.7
SPG11-213ENST00000558988 ADARB2-AS1A8MUL3 147 aa10.67□□□□□ -0.7
SPG11-213ENST00000558988 TRAPPC3LQ5T215 181 aa10.67□□□□□ -0.7
SPG11-213ENST00000558988 SSBP4Q9BWG4 385 aaPredicted RBP10.67□□□□□ -0.7
SPG11-213ENST00000558988 USP21Q9UK80 565 aa10.67□□□□□ -0.7
SPG11-213ENST00000558988 SH3D19Q5HYK7 790 aa10.66□□□□□ -0.7
SPG11-213ENST00000558988 SHISA2Q6UWI4 295 aa10.66□□□□□ -0.7
SPG11-213ENST00000558988 LENG1Q96BZ8 264 aaPredicted RBP10.66□□□□□ -0.7
SPG11-213ENST00000558988 PXDNQ92626 1479 aa10.66□□□□□ -0.7
SPG11-213ENST00000558988 NRXN1Q9ULB1 1477 aa10.66□□□□□ -0.7
SPG11-213ENST00000558988 RGPD8O14715 1765 aaPredicted RBP10.65□□□□□ -0.7
SPG11-213ENST00000558988 SIN3BO75182 1162 aa10.65□□□□□ -0.7
SPG11-213ENST00000558988 IRAK1P51617 712 aa10.65□□□□□ -0.7
SPG11-213ENST00000558988 NRG1Q02297 640 aaPredicted RBP10.65□□□□□ -0.7
SPG11-213ENST00000558988 KRT28Q7Z3Y7 464 aa10.65□□□□□ -0.7
SPG11-213ENST00000558988 PMFBP1Q8TBY8 1022 aa10.65□□□□□ -0.7
SPG11-213ENST00000558988 RBM6P78332 1123 aaKnown RBP10.64□□□□□ -0.71
SPG11-213ENST00000558988 CCDC85AQ96PX6 553 aaPredicted RBP10.64□□□□□ -0.71
SPG11-213ENST00000558988 RGS12O14924 1447 aa10.64□□□□□ -0.71
SPG11-213ENST00000558988 KIF1AQ12756 1690 aa10.63□□□□□ -0.71
SPG11-213ENST00000558988 EFSO43281 561 aa10.63□□□□□ -0.71
SPG11-213ENST00000558988 PSME1Q06323 249 aa10.63□□□□□ -0.71
SPG11-213ENST00000558988 ZIC5Q96T25 663 aa10.63□□□□□ -0.71
SPG11-213ENST00000558988 TRPC5Q9UL62 973 aaPredicted RBP10.63□□□□□ -0.71
SPG11-213ENST00000558988 RNF114Q9Y508 228 aa10.63□□□□□ -0.71
SPG11-213ENST00000558988 COL22A1Q8NFW1 1626 aaPredicted RBP10.62□□□□□ -0.71
SPG11-213ENST00000558988 ADGRB1O14514 1584 aa10.62□□□□□ -0.71
SPG11-213ENST00000558988 TAL1P17542 331 aaPredicted RBP10.62□□□□□ -0.71
SPG11-213ENST00000558988 LAMC2Q13753 1193 aa10.62□□□□□ -0.71
SPG11-213ENST00000558988 NIFKQ9BYG3 293 aaKnown RBP10.62□□□□□ -0.71
SPG11-213ENST00000558988 GJA3Q9Y6H8 435 aa10.62□□□□□ -0.71
SPG11-213ENST00000558988 SPATA31A3Q5VYP0 1347 aa10.61□□□□□ -0.71
SPG11-213ENST00000558988 A0A0A0MRY4 1105 aa10.61□□□□□ -0.71
SPG11-213ENST00000558988 NR1H3Q13133 447 aa10.61□□□□□ -0.71
SPG11-213ENST00000558988 SIRT1Q96EB6 747 aa10.61□□□□□ -0.71
SPG11-213ENST00000558988 CDK12Q9NYV4 1490 aaPredicted RBP10.61□□□□□ -0.71
SPG11-213ENST00000558988 TNS3Q68CZ2 1445 aa10.6□□□□□ -0.71
SPG11-213ENST00000558988 DLC1Q96QB1 1528 aa10.6□□□□□ -0.71
SPG11-213ENST00000558988 CCDC9Q9Y3X0 531 aaKnown RBP10.6□□□□□ -0.71
SPG11-213ENST00000558988 MARF1Q9Y4F3 1742 aaKnown RBP10.59□□□□□ -0.71
SPG11-213ENST00000558988 SSTR4P31391 388 aa10.59□□□□□ -0.71
SPG11-213ENST00000558988 SAMD5Q5TGI4 173 aa10.59□□□□□ -0.71
SPG11-213ENST00000558988 C20orf204Q6ZNR8 217 aa10.59□□□□□ -0.71
SPG11-213ENST00000558988 FNBP4Q8N3X1 1017 aaPredicted RBP10.59□□□□□ -0.71
SPG11-213ENST00000558988 ZNF592Q92610 1267 aa10.59□□□□□ -0.71
SPG11-213ENST00000558988 TNFRSF25Q93038 417 aa10.59□□□□□ -0.71
SPG11-213ENST00000558988 ATRNO75882 1429 aa10.58□□□□□ -0.72
SPG11-213ENST00000558988 USP32Q8NFA0 1604 aa10.58□□□□□ -0.72
SPG11-213ENST00000558988 RFC5P40937 340 aa10.58□□□□□ -0.72
SPG11-213ENST00000558988 NBPF1Q3BBV0 1214 aa10.58□□□□□ -0.72
SPG11-213ENST00000558988 NGDNQ8NEJ9 315 aaKnown RBP10.58□□□□□ -0.72
SPG11-213ENST00000558988 PRR36Q9H6K5 1346 aa10.58□□□□□ -0.72
SPG11-213ENST00000558988 BCL9LQ86UU0 1499 aa10.57□□□□□ -0.72
SPG11-213ENST00000558988 GPRASP1Q5JY77 1395 aa10.57□□□□□ -0.72
SPG11-213ENST00000558988 TATP17735 454 aaPredicted RBP10.57□□□□□ -0.72
SPG11-213ENST00000558988 ANKARQ7Z5J8 1434 aa10.57□□□□□ -0.72
SPG11-213ENST00000558988 ADGRB2O60241 1585 aa10.56□□□□□ -0.72
SPG11-213ENST00000558988 ARHGEF28Q8N1W1 1705 aaKnown RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms