RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SFPQP23246 707 aaKnown RBP eCLIP17.38■□□□□ 0.371e-6■■■■□ 21.6
CUX1-214ENST00000550008 KCNQ4P56696 695 aa17.38■□□□□ 0.37
CUX1-214ENST00000550008 NSFL1CQ9UNZ2 370 aaKnown RBP17.38■□□□□ 0.37
CUX1-214ENST00000550008 LUZP1Q86V48 1076 aa17.38■□□□□ 0.37
CUX1-214ENST00000550008 RRAGDQ9NQL2 400 aaPredicted RBP17.38■□□□□ 0.37
CUX1-214ENST00000550008 MAGEC2Q9UBF1 373 aaPredicted RBP17.38■□□□□ 0.37
CUX1-214ENST00000550008 NPHP4O75161 1426 aaPredicted RBP17.37■□□□□ 0.37
CUX1-214ENST00000550008 OFD1O75665 1012 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 TCIRG1Q13488 830 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 TMX1Q9H3N1 280 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 ARMT1Q9H993 441 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 PTPRMP28827 1452 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 TOM1O60784 492 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 RTN1Q16799 776 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 INO80Q9ULG1 1556 aaPredicted RBP17.37■□□□□ 0.37
CUX1-214ENST00000550008 TYRO3Q06418 890 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 ARHGEF40Q8TER5 1519 aa17.37■□□□□ 0.37
CUX1-214ENST00000550008 SMTNL1A8MU46 457 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 GNPATO15228 680 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 ATP5JP18859 108 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 CCDC186Q7Z3E2 898 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 KIDINS220Q9ULH0 1771 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 LMTK3Q96Q04 1460 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 PTCH1Q13635 1447 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 EPS15P42566 896 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 A0A1B0GVL5 298 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 CYP27B1O15528 508 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 BRD1O95696 1058 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 SYKP43405 635 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 ERCC4Q92889 916 aaPredicted RBP17.36■□□□□ 0.37
CUX1-214ENST00000550008 STAP2Q9UGK3 403 aa17.36■□□□□ 0.37
CUX1-214ENST00000550008 STX1AQ16623 288 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 TPCN1Q9ULQ1 816 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 TNNT3P45378 269 aaPredicted RBP17.35■□□□□ 0.37
CUX1-214ENST00000550008 ZNF771Q7L3S4 317 aaPredicted RBP17.35■□□□□ 0.37
CUX1-214ENST00000550008 TMC6Q7Z403 805 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 CRACR2BQ8N4Y2 399 aaPredicted RBP17.35■□□□□ 0.37
CUX1-214ENST00000550008 GOLGA6L1Q8N7Z2 621 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 ZNF589Q86UQ0 364 aaPredicted RBP17.35■□□□□ 0.37
CUX1-214ENST00000550008 FAM200AQ8TCP9 573 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 MRPS27Q92552 414 aaKnown RBP17.35■□□□□ 0.37
CUX1-214ENST00000550008 OSBPL3Q9H4L5 887 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 DIP2CQ9Y2E4 1556 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 CCDC194A0A1B0GVG4 234 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 CTAGE5O15320 804 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 EPHA10Q5JZY3 1008 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 DACH1Q9UI36 760 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 CEP131Q9UPN4 1083 aa17.35■□□□□ 0.37
CUX1-214ENST00000550008 AFMP43652 599 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 SLFNL1Q499Z3 407 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 ESR2Q92731 530 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 TANGO6Q9C0B7 1094 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 SASH1O94885 1247 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 ADORA1P30542 326 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 IFIT1BQ5T764 474 aaKnown RBP17.34■□□□□ 0.37
CUX1-214ENST00000550008 PI16Q6UXB8 463 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 HELLSQ9NRZ9 838 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 LMTK2Q8IWU2 1503 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 CCDC96Q2M329 555 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 APPBP2Q92624 585 aa17.34■□□□□ 0.37
CUX1-214ENST00000550008 LSG1Q9H089 658 aaKnown RBP17.34■□□□□ 0.37
CUX1-214ENST00000550008 SPTLC2O15270 562 aa17.33■□□□□ 0.37
CUX1-214ENST00000550008 AOPEPQ8N6M6 819 aa17.33■□□□□ 0.37
CUX1-214ENST00000550008 SMARCC1Q92922 1105 aaPredicted RBP17.33■□□□□ 0.37
CUX1-214ENST00000550008 ERVV-2B6SEH9 535 aa17.33■□□□□ 0.37
CUX1-214ENST00000550008 PDE8AO60658 829 aa17.33■□□□□ 0.37
CUX1-214ENST00000550008 LMOD1P29536 600 aaPredicted RBP17.33■□□□□ 0.37
CUX1-214ENST00000550008 FAM182BQ5T319 152 aa17.33■□□□□ 0.37
CUX1-214ENST00000550008 MAGEB6P1A0A0J9YX57 407 aa17.33■□□□□ 0.36
CUX1-214ENST00000550008 PHKBQ93100 1093 aa17.33■□□□□ 0.36
CUX1-214ENST00000550008 CEP89Q96ST8 783 aa17.33■□□□□ 0.36
CUX1-214ENST00000550008 CRNKL1Q9BZJ0 848 aaKnown RBP17.33■□□□□ 0.36
CUX1-214ENST00000550008 TFCP2L1Q9NZI6 479 aa17.33■□□□□ 0.36
CUX1-214ENST00000550008 ZBTB1Q9Y2K1 713 aa17.33■□□□□ 0.36
CUX1-214ENST00000550008 CCDC102BQ68D86 513 aa17.33■□□□□ 0.36
CUX1-214ENST00000550008 SEC63Q9UGP8 760 aaKnown RBP17.33■□□□□ 0.36
CUX1-214ENST00000550008 PDE4BQ07343 736 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 ZNF622Q969S3 477 aaKnown RBP eCLIP17.32■□□□□ 0.361e-7■■□□□ 13.1
CUX1-214ENST00000550008 KRT23Q9C075 422 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 KAT14Q9H8E8 782 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 NEXMIFQ5QGS0 1516 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 CBFA2T2O43439 604 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 STIM1Q13586 685 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 MCM9Q9NXL9 1143 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 ZNF335Q9H4Z2 1342 aaPredicted RBP17.32■□□□□ 0.36
CUX1-214ENST00000550008 CPSF1Q10570 1443 aaKnown RBP17.32■□□□□ 0.36
CUX1-214ENST00000550008 IGKV5-2P06315 115 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 CLCN1P35523 988 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 PTPN14Q15678 1187 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 TPTE2Q6XPS3 522 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 TRMT1LQ7Z2T5 733 aaKnown RBP17.32■□□□□ 0.36
CUX1-214ENST00000550008 SMARCE1Q969G3 411 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 RTCBQ9Y3I0 505 aaKnown RBP17.32■□□□□ 0.36
CUX1-214ENST00000550008 CPS1P31327 1500 aa17.32■□□□□ 0.36
CUX1-214ENST00000550008 hCG_1642624A0A1W2PR95 340 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 TOP1P11387 765 aaKnown RBP17.31■□□□□ 0.36
CUX1-214ENST00000550008 TNNT1P13805 278 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 CTDSPL2Q05D32 466 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 GREM2Q9H772 168 aa17.31■□□□□ 0.36
CUX1-214ENST00000550008 SETBP1Q9Y6X0 1596 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms