RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 REREQ9P2R6 1566 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 PLCG2P16885 1265 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 C6orf163Q5TEZ5 329 aa8.94□□□□□ -0.98
VPS13D-211ENST00000543710 SPATA24Q86W54 205 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 RBM28Q9NW13 759 aaKnown RBP8.93□□□□□ -0.98
VPS13D-211ENST00000543710 NIP7Q9Y221 180 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS13D-211ENST00000543710 ATP7AQ04656 1500 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 CCDC93Q567U6 631 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 CCDC129Q6ZRS4 1044 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 SLC12A7Q9Y666 1083 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 CDCA7LQ96GN5 454 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 TTC14Q96N46 770 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 MBIPQ9NS73 344 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 M0QZ92 97 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 HSF2BPO75031 334 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 IFIT5Q13325 482 aaKnown RBP8.93□□□□□ -0.98
VPS13D-211ENST00000543710 METTL24Q5JXM2 366 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 TTLL5Q6EMB2 1281 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 RTKN2Q8IZC4 609 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 ERMNQ8TAM6 284 aa8.93□□□□□ -0.98
VPS13D-211ENST00000543710 NOC2LQ9Y3T9 749 aaKnown RBP8.93□□□□□ -0.98
VPS13D-211ENST00000543710 NEBLO76041 1014 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 MAP2K1Q02750 393 aaPredicted RBP8.92□□□□□ -0.98
VPS13D-211ENST00000543710 IQCA1Q86XH1 822 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 TNS4Q8IZW8 715 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 NCOA7Q8NI08 942 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 MYOM2P54296 1465 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 BICDL2A1A5D9 508 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 ZBTB22O15209 634 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 MSL1Q68DK7 614 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 ZBTB7AO95365 584 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 ZSCAN22P10073 491 aaPredicted RBP8.92□□□□□ -0.98
VPS13D-211ENST00000543710 BRAPQ7Z569 592 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 GJD4Q96KN9 370 aaPredicted RBP8.92□□□□□ -0.98
VPS13D-211ENST00000543710 SELENOOQ9BVL4 669 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 CCDC94Q9BW85 323 aaPredicted RBP8.92□□□□□ -0.98
VPS13D-211ENST00000543710 STX6O43752 255 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 CYLC1P35663 651 aaPredicted RBP8.92□□□□□ -0.98
VPS13D-211ENST00000543710 SMC5Q8IY18 1101 aa8.92□□□□□ -0.98
VPS13D-211ENST00000543710 CLCN1P35523 988 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 MATR3P43243 847 aaKnown RBP eCLIP8.91□□□□□ -0.984e-7■■■■□ 26.1
VPS13D-211ENST00000543710 KRT83P78385 493 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 ZFYVE27Q5T4F4 411 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 ECHDC1Q9NTX5 307 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 ARHGAP31Q2M1Z3 1444 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 IREB2P48200 963 aaKnown RBP8.91□□□□□ -0.98
VPS13D-211ENST00000543710 CFAP100Q494V2 611 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 ERFEQ4G0M1 354 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 PARP10Q53GL7 1025 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 CCDC102AQ96A19 550 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 SIRT1Q96EB6 747 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 ZNF213O14771 459 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 ATP5DP30049 168 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 SNW1Q13573 536 aaKnown RBP8.91□□□□□ -0.98
VPS13D-211ENST00000543710 CEP135Q66GS9 1140 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 TMC4Q7Z404 712 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 WAPLQ7Z5K2 1190 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 SPC24Q8NBT2 197 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 PDE4BQ07343 736 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 BIRC2Q13490 618 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 NUTM1Q86Y26 1132 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 CCDC50Q8IVM0 306 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 CABLES1Q8TDN4 633 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 TBC1D5Q92609 795 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 MKNK2Q9HBH9 465 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 PALM3A6NDB9 673 aaPredicted RBP8.91□□□□□ -0.98
VPS13D-211ENST00000543710 PNMA8AQ86V59 439 aaPredicted RBP8.91□□□□□ -0.98
VPS13D-211ENST00000543710 SMC1BQ8NDV3 1235 aa8.91□□□□□ -0.98
VPS13D-211ENST00000543710 LAMC1P11047 1609 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 GOLGA8AA7E2F4 631 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 GOLGA8BA8MQT2 603 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 HOXB7P09629 217 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 CNGA1P29973 690 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 DLGAP5Q15398 846 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 AKAP4Q5JQC9 854 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 TICAM2Q86XR7 235 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 RNF214Q8ND24 703 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 ABCF2Q9UG63 623 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 NEFHP12036 1026 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 OSBPP22059 807 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 SH3BGRP55822 239 aaPredicted RBP8.9□□□□□ -0.98
VPS13D-211ENST00000543710 PLS1Q14651 629 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 FOXD4L6Q3SYB3 417 aaPredicted RBP8.9□□□□□ -0.98
VPS13D-211ENST00000543710 CWC27Q6UX04 472 aaKnown RBP8.9□□□□□ -0.98
VPS13D-211ENST00000543710 FOXD4L3Q6VB84 417 aaPredicted RBP8.9□□□□□ -0.98
VPS13D-211ENST00000543710 TSR2Q969E8 191 aaKnown RBP8.9□□□□□ -0.98
VPS13D-211ENST00000543710 SLC27A3Q5K4L6 730 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 EDC4Q6P2E9 1401 aaKnown RBP8.9□□□□□ -0.98
VPS13D-211ENST00000543710 CCDC155Q8N6L0 562 aa8.9□□□□□ -0.98
VPS13D-211ENST00000543710 NSFL1CQ9UNZ2 370 aaKnown RBP8.9□□□□□ -0.98
VPS13D-211ENST00000543710 NPATQ14207 1427 aa8.9□□□□□ -0.99
VPS13D-211ENST00000543710 SNRPA1P09661 255 aaKnown RBP8.9□□□□□ -0.99
VPS13D-211ENST00000543710 VAV2P52735 878 aa8.9□□□□□ -0.99
VPS13D-211ENST00000543710 SREBF2Q12772 1141 aa8.9□□□□□ -0.99
VPS13D-211ENST00000543710 ZNF444Q8N0Y2 327 aaPredicted RBP8.9□□□□□ -0.99
VPS13D-211ENST00000543710 CNNM3Q8NE01 707 aa8.9□□□□□ -0.99
VPS13D-211ENST00000543710 LLPHQ9BRT6 129 aaKnown RBP8.9□□□□□ -0.99
VPS13D-211ENST00000543710 EN1Q05925 392 aaPredicted RBP8.89□□□□□ -0.99
VPS13D-211ENST00000543710 CCDC96Q2M329 555 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 CACNA2D4Q7Z3S7 1137 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms