RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 DCTN1Q14203 1278 aa15.94■□□□□ 0.14
HDAC1-206ENST00000476391 ATL3Q6DD88 541 aa15.94■□□□□ 0.14
HDAC1-206ENST00000476391 KCNV1Q6PIU1 500 aa15.94■□□□□ 0.14
HDAC1-206ENST00000476391 POTEDQ86YR6 584 aa15.94■□□□□ 0.14
HDAC1-206ENST00000476391 DDX11Q96FC9 970 aa15.94■□□□□ 0.14
HDAC1-206ENST00000476391 IL1RAPL2Q9NP60 686 aa15.94■□□□□ 0.14
HDAC1-206ENST00000476391 CASP8Q14790 479 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 PLEKHO1Q53GL0 409 aaPredicted RBP15.93■□□□□ 0.14
HDAC1-206ENST00000476391 CEP112Q8N8E3 955 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 CCDC102AQ96A19 550 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 DHX58Q96C10 678 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 A0A087WWV3 80 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 F6X3S4 739 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 EXOC5O00471 708 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 CBFA2T2O43439 604 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 TTLL5Q6EMB2 1281 aa15.93■□□□□ 0.14
HDAC1-206ENST00000476391 FAM177A1Q8N128 213 aaPredicted RBP15.93■□□□□ 0.14
HDAC1-206ENST00000476391 CUTAO60888 179 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 FANCCQ00597 558 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 DDR1Q08345 913 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 GBP6Q6ZN66 633 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 AFAP1L1Q8TED9 768 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 TBC1D22AQ8WUA7 517 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 FAM212AQ96EL1 285 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 ABCB6Q9NP58 842 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 GNL3LQ9NVN8 582 aaKnown RBP15.92■□□□□ 0.14
HDAC1-206ENST00000476391 H3BQV1 296 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 ADD1P35611 737 aaKnown RBP15.92■□□□□ 0.14
HDAC1-206ENST00000476391 TUBB2AQ13885 445 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 IFFO2Q5TF58 517 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 GIMAP7Q8NHV1 300 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 TUBB2BQ9BVA1 445 aa15.92■□□□□ 0.14
HDAC1-206ENST00000476391 GOLIM4O00461 696 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 IKBKBO14920 756 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 LIG3P49916 1009 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 NCAPHQ15003 741 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 DPCR1Q3MIW9 517 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 CREB3L3Q68CJ9 461 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 ERCC4Q92889 916 aaPredicted RBP15.91■□□□□ 0.14
HDAC1-206ENST00000476391 VIPAS39Q9H9C1 493 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 KIAA1468Q9P260 1216 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 NEXMIFQ5QGS0 1516 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 USP42Q9H9J4 1324 aaKnown RBP15.91■□□□□ 0.14
HDAC1-206ENST00000476391 ITSN1Q15811 1721 aa15.91■□□□□ 0.14
HDAC1-206ENST00000476391 KIF3BO15066 747 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 BLOC1S2Q6QNY1 142 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 TMEM139Q8IV31 216 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 CTCFLQ8NI51 663 aaPredicted RBP15.9■□□□□ 0.14
HDAC1-206ENST00000476391 SSH3Q8TE77 659 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 BRF1Q92994 677 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 MAP3K5Q99683 1374 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 EBAG9O00559 213 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 CHGAP10645 457 aaKnown RBP15.9■□□□□ 0.14
HDAC1-206ENST00000476391 AARSP49588 968 aaKnown RBP eCLIP15.9■□□□□ 0.14
HDAC1-206ENST00000476391 MAP2K1Q02750 393 aaPredicted RBP15.9■□□□□ 0.14
HDAC1-206ENST00000476391 NEDD9Q14511 834 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 FSIP1Q8NA03 581 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 PRPF38AQ8NAV1 312 aaKnown RBP15.9■□□□□ 0.14
HDAC1-206ENST00000476391 SDF4Q9BRK5 362 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 PLEKHA4Q9H4M7 779 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 LMTK2Q8IWU2 1503 aa15.9■□□□□ 0.14
HDAC1-206ENST00000476391 SHOX2O60902 331 aaPredicted RBP15.89■□□□□ 0.13
HDAC1-206ENST00000476391 GLRX3O76003 335 aaKnown RBP15.89■□□□□ 0.13
HDAC1-206ENST00000476391 FMR1NBQ8N0W7 255 aaPredicted RBP15.89■□□□□ 0.13
HDAC1-206ENST00000476391 MIEF2Q96C03 454 aa15.89■□□□□ 0.13
HDAC1-206ENST00000476391 PNKPQ96T60 521 aa15.89■□□□□ 0.13
HDAC1-206ENST00000476391 RBM8AQ9Y5S9 174 aaKnown RBP15.89■□□□□ 0.13
HDAC1-206ENST00000476391 FAM169AQ9Y6X4 670 aa15.89■□□□□ 0.13
HDAC1-206ENST00000476391 STX10O60499 249 aa15.89■□□□□ 0.13
HDAC1-206ENST00000476391 WDHD1O75717 1129 aaPredicted RBP15.89■□□□□ 0.13
HDAC1-206ENST00000476391 RPS6KB1P23443 525 aa15.89■□□□□ 0.13
HDAC1-206ENST00000476391 G2E3Q7L622 706 aa15.89■□□□□ 0.13
HDAC1-206ENST00000476391 RHPN1Q8TCX5 695 aa15.89■□□□□ 0.13
HDAC1-206ENST00000476391 N4BP2Q86UW6 1770 aaPredicted RBP15.88■□□□□ 0.13
HDAC1-206ENST00000476391 RNF40O75150 1001 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 PHACTR2O75167 634 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 GPTP24298 496 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 TOB2Q14106 344 aaPredicted RBP15.88■□□□□ 0.13
HDAC1-206ENST00000476391 PPP2R5AQ15172 486 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 MAP9Q49MG5 647 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 FBXW10Q5XX13 1052 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 VSTM4Q8IW00 320 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 CCDC12Q8WUD4 166 aaPredicted RBP15.88■□□□□ 0.13
HDAC1-206ENST00000476391 MAP4K1Q92918 833 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 CDC23Q9UJX2 597 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 PRPF6O94906 941 aaKnown RBP15.88■□□□□ 0.13
HDAC1-206ENST00000476391 TOP1P11387 765 aaKnown RBP15.88■□□□□ 0.13
HDAC1-206ENST00000476391 ERCC3P19447 782 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 UBASH3AP57075 661 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 NLRP12P59046 1061 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 CEBPZQ03701 1054 aaKnown RBP15.88■□□□□ 0.13
HDAC1-206ENST00000476391 C11orf91Q3C1V1 193 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 FBXW7Q969H0 707 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 SGSM3Q96HU1 749 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 CABS1Q96KC9 395 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 ZNF396Q96N95 335 aaPredicted RBP15.88■□□□□ 0.13
HDAC1-206ENST00000476391 ATP7BP35670 1465 aa15.88■□□□□ 0.13
HDAC1-206ENST00000476391 MYO1BO43795 1136 aa15.87■□□□□ 0.13
HDAC1-206ENST00000476391 NAA16Q6N069 864 aaPredicted RBP15.87■□□□□ 0.13
HDAC1-206ENST00000476391 JMYQ8N9B5 988 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms