RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 FKBP4Q02790 459 aaKnown RBP eCLIP30.7■■■□□ 2.51
CPNE1-216ENST00000437340 RPS6KB1P23443 525 aa30.69■■■□□ 2.5
CPNE1-216ENST00000437340 SLC27A3Q5K4L6 730 aa30.69■■■□□ 2.5
CPNE1-216ENST00000437340 CCDC152Q4G0S7 254 aa30.69■■■□□ 2.5
CPNE1-216ENST00000437340 AMIGO3Q86WK7 504 aa30.69■■■□□ 2.5
CPNE1-216ENST00000437340 LAMB2P55268 1798 aa30.67■■■□□ 2.5
CPNE1-216ENST00000437340 RGPD3A6NKT7 1758 aaPredicted RBP30.67■■■□□ 2.5
CPNE1-216ENST00000437340 RGPD4Q7Z3J3 1758 aa30.67■■■□□ 2.5
CPNE1-216ENST00000437340 APBA3O96018 575 aa30.66■■■□□ 2.5
CPNE1-216ENST00000437340 PUM3Q15397 648 aaKnown RBP30.66■■■□□ 2.5
CPNE1-216ENST00000437340 PROM2Q8N271 834 aa30.66■■■□□ 2.5
CPNE1-216ENST00000437340 MCTP1Q6DN14 999 aa30.66■■■□□ 2.5
CPNE1-216ENST00000437340 LPIN2Q92539 896 aa30.66■■■□□ 2.5
CPNE1-216ENST00000437340 DDX60Q8IY21 1712 aaKnown RBP30.66■■■□□ 2.5
CPNE1-216ENST00000437340 MAST3O60307 1309 aa30.65■■■□□ 2.5
CPNE1-216ENST00000437340 WDR33Q9C0J8 1336 aaKnown RBP30.65■■■□□ 2.5
CPNE1-216ENST00000437340 FGFR2P21802 821 aa30.65■■■□□ 2.5
CPNE1-216ENST00000437340 SCARF1Q14162 830 aa30.65■■■□□ 2.5
CPNE1-216ENST00000437340 TXNRD1Q16881 649 aa30.65■■■□□ 2.5
CPNE1-216ENST00000437340 RTCBQ9Y3I0 505 aaKnown RBP30.65■■■□□ 2.5
CPNE1-216ENST00000437340 ZAP70P43403 619 aa30.64■■■□□ 2.5
CPNE1-216ENST00000437340 TAF6LQ9Y6J9 622 aa30.64■■■□□ 2.5
CPNE1-216ENST00000437340 FAM177BA6PVY3 158 aa30.64■■■□□ 2.49
CPNE1-216ENST00000437340 PLSCR1O15162 318 aa30.64■■■□□ 2.49
CPNE1-216ENST00000437340 CYP21A2P08686 494 aa30.64■■■□□ 2.49
CPNE1-216ENST00000437340 NEK1Q96PY6 1258 aa30.64■■■□□ 2.49
CPNE1-216ENST00000437340 MPHOSPH8Q99549 860 aa30.64■■■□□ 2.49
CPNE1-216ENST00000437340 SMC3Q9UQE7 1217 aa30.64■■■□□ 2.49
CPNE1-216ENST00000437340 LARGE1O95461 756 aa30.63■■■□□ 2.49
CPNE1-216ENST00000437340 UQCRFS1P1P0C7P4 283 aa30.63■■■□□ 2.49
CPNE1-216ENST00000437340 ARID4AP29374 1257 aaPredicted RBP30.63■■■□□ 2.49
CPNE1-216ENST00000437340 TTF1Q15361 905 aaPredicted RBP30.63■■■□□ 2.49
CPNE1-216ENST00000437340 KLHL40Q2TBA0 621 aa30.63■■■□□ 2.49
CPNE1-216ENST00000437340 HSPD1P10809 573 aaKnown RBP30.62■■■□□ 2.49
CPNE1-216ENST00000437340 MCAMP43121 646 aa30.62■■■□□ 2.49
CPNE1-216ENST00000437340 ILDR1Q86SU0 546 aaPredicted RBP30.62■■■□□ 2.49
CPNE1-216ENST00000437340 HMGB1P09429 215 aaKnown RBP30.61■■■□□ 2.49
CPNE1-216ENST00000437340 ME3Q16798 604 aa30.61■■■□□ 2.49
CPNE1-216ENST00000437340 ZSCAN25Q6NSZ9 544 aa30.61■■■□□ 2.49
CPNE1-216ENST00000437340 LARP6Q9BRS8 491 aaKnown RBP30.61■■■□□ 2.49
CPNE1-216ENST00000437340 LMBRD1Q9NUN5 540 aa30.61■■■□□ 2.49
CPNE1-216ENST00000437340 IGHMBP2P38935 993 aaKnown RBP30.61■■■□□ 2.49
CPNE1-216ENST00000437340 APPBP2Q92624 585 aa30.61■■■□□ 2.49
CPNE1-216ENST00000437340 OSBP2Q969R2 916 aa30.61■■■□□ 2.49
CPNE1-216ENST00000437340 DDX24Q9GZR7 859 aaKnown RBP eCLIP30.61■■■□□ 2.493e-7■■■■■ 27.1
CPNE1-216ENST00000437340 GZF1Q9H116 711 aaPredicted RBP30.61■■■□□ 2.49
CPNE1-216ENST00000437340 TPCN1Q9ULQ1 816 aa30.61■■■□□ 2.49
CPNE1-216ENST00000437340 ARAP2Q8WZ64 1704 aa30.6■■■□□ 2.49
CPNE1-216ENST00000437340 SLFNL1Q499Z3 407 aa30.6■■■□□ 2.49
CPNE1-216ENST00000437340 NARFQ9UHQ1 456 aa30.6■■■□□ 2.49
CPNE1-216ENST00000437340 PDIA4P13667 645 aaKnown RBP30.59■■■□□ 2.49
CPNE1-216ENST00000437340 SLC5A1P13866 664 aa30.59■■■□□ 2.49
CPNE1-216ENST00000437340 L1TD1Q5T7N2 865 aaKnown RBP30.59■■■□□ 2.49
CPNE1-216ENST00000437340 CCDC102BQ68D86 513 aa30.59■■■□□ 2.49
CPNE1-216ENST00000437340 CCDC83Q8IWF9 413 aa30.59■■■□□ 2.49
CPNE1-216ENST00000437340 SEC31BQ9NQW1 1179 aa30.59■■■□□ 2.49
CPNE1-216ENST00000437340 SRP68Q9UHB9 627 aaKnown RBP30.59■■■□□ 2.49
CPNE1-216ENST00000437340 ISY1Q9ULR0 285 aaKnown RBP30.59■■■□□ 2.49
CPNE1-216ENST00000437340 AKAP11Q9UKA4 1901 aa30.59■■■□□ 2.49
CPNE1-216ENST00000437340 M0R2C6 588 aa30.59■■■□□ 2.49
CPNE1-216ENST00000437340 PHF14O94880 888 aa30.59■■■□□ 2.49
CPNE1-216ENST00000437340 TOB2Q14106 344 aaPredicted RBP30.59■■■□□ 2.49
CPNE1-216ENST00000437340 ARHGEF1Q92888 912 aaKnown RBP30.59■■■□□ 2.49
CPNE1-216ENST00000437340 BCL2L12Q9HB09 334 aa30.59■■■□□ 2.49
CPNE1-216ENST00000437340 DDX49Q9Y6V7 483 aaKnown RBP30.58■■■□□ 2.49
CPNE1-216ENST00000437340 FSD2A1L4K1 749 aa30.56■■■□□ 2.48
CPNE1-216ENST00000437340 COL9A3Q14050 684 aaPredicted RBP30.56■■■□□ 2.48
CPNE1-216ENST00000437340 WASHC4Q2M389 1173 aa30.56■■■□□ 2.48
CPNE1-216ENST00000437340 CDC5LQ99459 802 aaKnown RBP30.56■■■□□ 2.48
CPNE1-216ENST00000437340 COL24A1Q17RW2 1714 aa30.56■■■□□ 2.48
CPNE1-216ENST00000437340 SF3B3Q15393 1217 aaKnown RBP30.56■■■□□ 2.48
CPNE1-216ENST00000437340 PI16Q6UXB8 463 aa30.56■■■□□ 2.48
CPNE1-216ENST00000437340 CTNNA3Q9UI47 895 aa30.56■■■□□ 2.48
CPNE1-216ENST00000437340 PHKA1P46020 1223 aa30.55■■■□□ 2.48
CPNE1-216ENST00000437340 ST3GAL1Q11201 340 aa30.55■■■□□ 2.48
CPNE1-216ENST00000437340 TRAPPC3LQ5T215 181 aa30.55■■■□□ 2.48
CPNE1-216ENST00000437340 GOLGA6L3A6NEY3 463 aa30.54■■■□□ 2.48
CPNE1-216ENST00000437340 STX6O43752 255 aa30.54■■■□□ 2.48
CPNE1-216ENST00000437340 SYT1P21579 422 aa30.54■■■□□ 2.48
CPNE1-216ENST00000437340 SLC10A5Q5PT55 438 aa30.54■■■□□ 2.48
CPNE1-216ENST00000437340 HELBQ8NG08 1087 aaPredicted RBP30.54■■■□□ 2.48
CPNE1-216ENST00000437340 ZPR1O75312 459 aa30.54■■■□□ 2.48
CPNE1-216ENST00000437340 GJB2P29033 226 aa30.54■■■□□ 2.48
CPNE1-216ENST00000437340 ADD2P35612 726 aa30.54■■■□□ 2.48
CPNE1-216ENST00000437340 FOXD4L5Q5VV16 416 aaPredicted RBP30.54■■■□□ 2.48
CPNE1-216ENST00000437340 FOXD4L4Q8WXT5 416 aaPredicted RBP30.54■■■□□ 2.48
CPNE1-216ENST00000437340 MYH7P12883 1935 aa30.53■■■□□ 2.48
CPNE1-216ENST00000437340 ZSCAN22P10073 491 aaPredicted RBP30.53■■■□□ 2.48
CPNE1-216ENST00000437340 UBE3CQ15386 1083 aa30.53■■■□□ 2.48
CPNE1-216ENST00000437340 ERFEQ4G0M1 354 aa30.53■■■□□ 2.48
CPNE1-216ENST00000437340 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.52■■■□□ 2.48
CPNE1-216ENST00000437340 PRPF40AO75400 957 aaKnown RBP30.52■■■□□ 2.48
CPNE1-216ENST00000437340 ADRA2BP18089 450 aa30.52■■■□□ 2.48
CPNE1-216ENST00000437340 STOX1Q6ZVD7 989 aa30.52■■■□□ 2.48
CPNE1-216ENST00000437340 DHX32Q7L7V1 743 aaKnown RBP30.52■■■□□ 2.48
CPNE1-216ENST00000437340 TCEANC2Q96MN5 208 aa30.52■■■□□ 2.48
CPNE1-216ENST00000437340 NYXQ9GZU5 481 aa30.52■■■□□ 2.48
CPNE1-216ENST00000437340 CASZ1Q86V15 1759 aa30.51■■■□□ 2.48
CPNE1-216ENST00000437340 RFC4P35249 363 aa30.51■■■□□ 2.48
CPNE1-216ENST00000437340 TBC1D9BQ66K14 1250 aa30.51■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms