RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 PBX4Q9BYU1 374 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 RASSF4Q9H2L5 321 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 CNTN3Q9P232 1028 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 SALL4Q9UJQ4 1053 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 POLIQ9UNA4 740 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 PPME1Q9Y570 386 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 ABCC8Q09428 1581 aa7.53□□□□□ -1.2
USP48-202ENST00000374730 CES1P23141 567 aa7.52□□□□□ -1.21
USP48-202ENST00000374730 ITGB7P26010 798 aa7.52□□□□□ -1.21
USP48-202ENST00000374730 C1orf127Q8N9H9 656 aa7.52□□□□□ -1.21
USP48-202ENST00000374730 WFDC12Q8WWY7 111 aa7.52□□□□□ -1.21
USP48-202ENST00000374730 MRPL18Q9H0U6 180 aaKnown RBP7.52□□□□□ -1.21
USP48-202ENST00000374730 KANSL3Q9P2N6 904 aa7.52□□□□□ -1.21
USP48-202ENST00000374730 FZD6O60353 706 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 ABL1P00519 1130 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 PTPRAP18433 802 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 NOS3P29474 1203 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 CDC27P30260 824 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 ZNF211Q13398 564 aaPredicted RBP7.51□□□□□ -1.21
USP48-202ENST00000374730 AAMPQ13685 434 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 TMEM130Q8N3G9 435 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 SNX29Q8TEQ0 813 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 CHRDQ9H2X0 955 aa7.51□□□□□ -1.21
USP48-202ENST00000374730 BAZ1BQ9UIG0 1483 aaKnown RBP7.5□□□□□ -1.21
USP48-202ENST00000374730 A6NHS1 94 aa7.5□□□□□ -1.21
USP48-202ENST00000374730 PDE4CQ08493 712 aa7.5□□□□□ -1.21
USP48-202ENST00000374730 GJD3Q8N144 294 aa7.5□□□□□ -1.21
USP48-202ENST00000374730 LACRTQ9GZZ8 138 aa7.5□□□□□ -1.21
USP48-202ENST00000374730 ADAM19Q9H013 955 aa7.5□□□□□ -1.21
USP48-202ENST00000374730 EEA1Q15075 1411 aa7.5□□□□□ -1.21
USP48-202ENST00000374730 HMGXB3Q12766 1538 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 FAM177BA6PVY3 158 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 ICMTO60725 284 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 TNFRSF21O75509 655 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 IREB2P48200 963 aaKnown RBP7.49□□□□□ -1.21
USP48-202ENST00000374730 TP53INP1Q96A56 240 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 ARID3AQ99856 593 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 PCGF6Q9BYE7 350 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 AKTIPQ9H8T0 292 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 DZANK1Q9NVP4 752 aa7.49□□□□□ -1.21
USP48-202ENST00000374730 F8W735 103 aaPredicted RBP7.48□□□□□ -1.21
USP48-202ENST00000374730 LINC01387J3KSC0 135 aa7.48□□□□□ -1.21
USP48-202ENST00000374730 NFKBIEO00221 500 aa7.48□□□□□ -1.21
USP48-202ENST00000374730 PHACTR2O75167 634 aa7.48□□□□□ -1.21
USP48-202ENST00000374730 FAM117BQ6P1L5 589 aa7.48□□□□□ -1.21
USP48-202ENST00000374730 Q6ZS46 218 aa7.48□□□□□ -1.21
USP48-202ENST00000374730 MEGF10Q96KG7 1140 aa7.48□□□□□ -1.21
USP48-202ENST00000374730 POP1Q99575 1024 aaKnown RBP7.48□□□□□ -1.21
USP48-202ENST00000374730 ANO2Q9NQ90 1003 aa7.48□□□□□ -1.21
USP48-202ENST00000374730 EDN3P14138 238 aa7.47□□□□□ -1.21
USP48-202ENST00000374730 EPHA1P21709 976 aa7.47□□□□□ -1.21
USP48-202ENST00000374730 TRIM26Q12899 539 aaPredicted RBP7.47□□□□□ -1.21
USP48-202ENST00000374730 ADAMTSL4Q6UY14 1074 aa7.47□□□□□ -1.21
USP48-202ENST00000374730 KLHL23Q8NBE8 558 aa7.47□□□□□ -1.21
USP48-202ENST00000374730 RETREG2Q8NC44 543 aa7.47□□□□□ -1.21
USP48-202ENST00000374730 GALNT11Q8NCW6 608 aa7.47□□□□□ -1.21
USP48-202ENST00000374730 WNT8BQ93098 351 aa7.47□□□□□ -1.21
USP48-202ENST00000374730 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.47□□□□□ -1.21
USP48-202ENST00000374730 H3BRB1 525 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 H3BRJ5 948 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 PDE2AO00408 941 aaPredicted RBP7.46□□□□□ -1.22
USP48-202ENST00000374730 TM4SF5O14894 197 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 FSCN2O14926 492 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 EREGO14944 169 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 ACPPP15309 386 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 SERPINB4P48594 390 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.46□□□□□ -1.22
USP48-202ENST00000374730 GLYCTKQ8IVS8 523 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 HOMEZQ8IX15 550 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 DZIP1LQ8IYY4 767 aaKnown RBP7.46□□□□□ -1.22
USP48-202ENST00000374730 TMEM102Q8N9M5 508 aaPredicted RBP7.46□□□□□ -1.22
USP48-202ENST00000374730 TUT1Q9H6E5 874 aaKnown RBP7.46□□□□□ -1.22
USP48-202ENST00000374730 CCDC87Q9NVE4 849 aa7.46□□□□□ -1.22
USP48-202ENST00000374730 CD68P34810 354 aaPredicted RBP7.45□□□□□ -1.22
USP48-202ENST00000374730 CABP4P57796 275 aa7.45□□□□□ -1.22
USP48-202ENST00000374730 PIP4K2BP78356 416 aa7.45□□□□□ -1.22
USP48-202ENST00000374730 FOXD4L6Q3SYB3 417 aaPredicted RBP7.45□□□□□ -1.22
USP48-202ENST00000374730 PRSS36Q5K4E3 855 aa7.45□□□□□ -1.22
USP48-202ENST00000374730 TXNDC11Q6PKC3 985 aa7.45□□□□□ -1.22
USP48-202ENST00000374730 FOXD4L3Q6VB84 417 aaPredicted RBP7.45□□□□□ -1.22
USP48-202ENST00000374730 TXNDC2Q86VQ3 553 aa7.45□□□□□ -1.22
USP48-202ENST00000374730 FAM9AQ8IZU1 332 aaPredicted RBP7.45□□□□□ -1.22
USP48-202ENST00000374730 SEC31BQ9NQW1 1179 aa7.45□□□□□ -1.22
USP48-202ENST00000374730 SH2B1Q9NRF2 756 aaPredicted RBP7.45□□□□□ -1.22
USP48-202ENST00000374730 FOXD3Q9UJU5 478 aaPredicted RBP7.45□□□□□ -1.22
USP48-202ENST00000374730 AMOTL2Q9Y2J4 779 aa7.45□□□□□ -1.22
USP48-202ENST00000374730 WRNQ14191 1432 aaPredicted RBP eCLIP7.44□□□□□ -1.22
USP48-202ENST00000374730 ECM1Q16610 540 aa7.44□□□□□ -1.22
USP48-202ENST00000374730 ZMYM1Q5SVZ6 1142 aa7.44□□□□□ -1.22
USP48-202ENST00000374730 OSMRQ99650 979 aa7.44□□□□□ -1.22
USP48-202ENST00000374730 OSGEPQ9NPF4 335 aa7.44□□□□□ -1.22
USP48-202ENST00000374730 SOX13Q9UN79 622 aa7.44□□□□□ -1.22
USP48-202ENST00000374730 SYNJ1O43426 1573 aa7.44□□□□□ -1.22
USP48-202ENST00000374730 NCAPD3P42695 1498 aa7.43□□□□□ -1.22
USP48-202ENST00000374730 NXPE3Q969Y0 559 aa7.43□□□□□ -1.22
USP48-202ENST00000374730 HHIPQ96QV1 700 aa7.43□□□□□ -1.22
USP48-202ENST00000374730 ZKSCAN3Q9BRR0 538 aa7.43□□□□□ -1.22
USP48-202ENST00000374730 CARD10Q9BWT7 1032 aa7.43□□□□□ -1.22
USP48-202ENST00000374730 BRPF3Q9ULD4 1205 aa7.43□□□□□ -1.22
USP48-202ENST00000374730 PRDM2Q13029 1718 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms