RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 SLC9C1Q4G0N8 1177 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 SH3TC2Q8TF17 1288 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 TSR2Q969E8 191 aaKnown RBP10.42□□□□□ -0.74
CD44-205ENST00000352818 PHACTR3Q96KR7 559 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 GUCD1Q96NT3 240 aa10.42□□□□□ -0.74
CD44-205ENST00000352818 KIF16BQ96L93 1317 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 MTFR1Q15390 333 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 LDLRAD1Q5T700 205 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 IL17REQ8NFR9 667 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 FAM122AQ96E09 287 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 DBNDD1Q9H9R9 158 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 KDM3BQ7LBC6 1761 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 CACNA1AO00555 2505 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 PIEZO1Q92508 2521 aa10.41□□□□□ -0.74
CD44-205ENST00000352818 ZNF280AP59817 542 aaPredicted RBP10.4□□□□□ -0.74
CD44-205ENST00000352818 SUSD4Q5VX71 490 aa10.4□□□□□ -0.74
CD44-205ENST00000352818 ZKSCAN2Q63HK3 967 aa10.4□□□□□ -0.74
CD44-205ENST00000352818 NPM2Q86SE8 214 aaKnown RBP10.4□□□□□ -0.74
CD44-205ENST00000352818 SP8Q8IXZ3 490 aa10.4□□□□□ -0.74
CD44-205ENST00000352818 FMNL2Q96PY5 1086 aa10.4□□□□□ -0.74
CD44-205ENST00000352818 GDF15Q99988 308 aa10.4□□□□□ -0.74
CD44-205ENST00000352818 RPTORQ8N122 1335 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 SP3Q02447 781 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 LRIT3Q3SXY7 679 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 NBPF11Q86T75 865 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 CLUAP1Q96AJ1 413 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 PTPN18Q99952 460 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 NYXQ9GZU5 481 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 FZD1Q9UP38 647 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 NR2E3Q9Y5X4 410 aa10.39□□□□□ -0.75
CD44-205ENST00000352818 NTSR2O95665 410 aa10.38□□□□□ -0.75
CD44-205ENST00000352818 VIL1P09327 827 aaKnown RBP10.38□□□□□ -0.75
CD44-205ENST00000352818 MVPQ14764 893 aaKnown RBP10.38□□□□□ -0.75
CD44-205ENST00000352818 SMC4Q9NTJ3 1288 aa10.38□□□□□ -0.75
CD44-205ENST00000352818 IBTKQ9P2D0 1353 aaPredicted RBP10.38□□□□□ -0.75
CD44-205ENST00000352818 MANSC4A6NHS7 340 aaPredicted RBP10.37□□□□□ -0.75
CD44-205ENST00000352818 HTATSF1O43719 755 aaKnown RBP10.37□□□□□ -0.75
CD44-205ENST00000352818 GPTP24298 496 aa10.37□□□□□ -0.75
CD44-205ENST00000352818 BMP8BP34820 402 aa10.37□□□□□ -0.75
CD44-205ENST00000352818 BCAMP50895 628 aa10.37□□□□□ -0.75
CD44-205ENST00000352818 ATF7IPQ6VMQ6 1270 aa10.37□□□□□ -0.75
CD44-205ENST00000352818 PANK1Q8TE04 598 aa10.37□□□□□ -0.75
CD44-205ENST00000352818 SSH1Q8WYL5 1049 aa10.37□□□□□ -0.75
CD44-205ENST00000352818 ARHGAP45Q92619 1136 aa10.37□□□□□ -0.75
CD44-205ENST00000352818 FRAT1Q92837 279 aaPredicted RBP10.37□□□□□ -0.75
CD44-205ENST00000352818 HTATIP2Q9BUP3 242 aa10.37□□□□□ -0.75
CD44-205ENST00000352818 IPO8O15397 1037 aaKnown RBP10.36□□□□□ -0.75
CD44-205ENST00000352818 ECE2O60344 883 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 BBOX1O75936 387 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 RLBP1P12271 317 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 GJA5P36382 358 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 INHBEP58166 350 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 TTLL12Q14166 644 aaPredicted RBP10.36□□□□□ -0.75
CD44-205ENST00000352818 DOK7Q18PE1 504 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 DZIP1LQ8IYY4 767 aaKnown RBP10.36□□□□□ -0.75
CD44-205ENST00000352818 PIAS4Q8N2W9 510 aaPredicted RBP10.36□□□□□ -0.75
CD44-205ENST00000352818 GAS2L2Q8NHY3 880 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 CLMNQ96JQ2 1002 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 SNX27Q96L92 541 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 GMLQ99445 158 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 ARHGAP39Q9C0H5 1083 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 MBIPQ9NS73 344 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 COG6Q9Y2V7 657 aa10.36□□□□□ -0.75
CD44-205ENST00000352818 RIMBP2O15034 1052 aa10.35□□□□□ -0.75
CD44-205ENST00000352818 VAMP4O75379 141 aa10.35□□□□□ -0.75
CD44-205ENST00000352818 TRIM27P14373 513 aa10.35□□□□□ -0.75
CD44-205ENST00000352818 GJA8P48165 433 aa10.35□□□□□ -0.75
CD44-205ENST00000352818 PRKG1Q13976 671 aa10.35□□□□□ -0.75
CD44-205ENST00000352818 FTSJ3Q8IY81 847 aaKnown RBP10.35□□□□□ -0.75
CD44-205ENST00000352818 POLLQ9UGP5 575 aa10.35□□□□□ -0.75
CD44-205ENST00000352818 SIPA1L3O60292 1781 aaPredicted RBP10.34□□□□□ -0.75
CD44-205ENST00000352818 SCN9AQ15858 1988 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 POTEB2H3BUK9 544 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 CHL1O00533 1208 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 TCIRG1Q13488 830 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 WASHC4Q2M389 1173 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 NBPF9Q3BBW0 867 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 SLC10A5Q5PT55 438 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 TTLL7Q6ZT98 887 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 ZNF34Q8IZ26 560 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 WNK4Q96J92 1243 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 THUMPD2Q9BTF0 503 aaKnown RBP10.34□□□□□ -0.75
CD44-205ENST00000352818 TMX4Q9H1E5 349 aaPredicted RBP10.34□□□□□ -0.75
CD44-205ENST00000352818 DDX19BQ9UMR2 479 aa10.34□□□□□ -0.75
CD44-205ENST00000352818 SYNGAP1Q96PV0 1343 aa10.33□□□□□ -0.76
CD44-205ENST00000352818 TESPA1A2RU30 521 aaPredicted RBP10.33□□□□□ -0.76
CD44-205ENST00000352818 ERVV-1B6SEH8 477 aa10.33□□□□□ -0.76
CD44-205ENST00000352818 TEFQ10587 303 aa10.33□□□□□ -0.76
CD44-205ENST00000352818 MAP3K12Q12852 859 aa10.33□□□□□ -0.76
CD44-205ENST00000352818 MRPL50Q8N5N7 158 aaKnown RBP10.33□□□□□ -0.76
CD44-205ENST00000352818 MYOZ2Q9NPC6 264 aa10.33□□□□□ -0.76
CD44-205ENST00000352818 CEMIPQ8WUJ3 1361 aa10.33□□□□□ -0.76
CD44-205ENST00000352818 SSC5DA1L4H1 1573 aa10.33□□□□□ -0.76
CD44-205ENST00000352818 COL4A1P02462 1669 aa10.32□□□□□ -0.76
CD44-205ENST00000352818 EVI5O60447 810 aa10.32□□□□□ -0.76
CD44-205ENST00000352818 GJB1P08034 283 aa10.32□□□□□ -0.76
CD44-205ENST00000352818 ZBTB48P10074 688 aaPredicted RBP10.32□□□□□ -0.76
CD44-205ENST00000352818 TWISTNBQ3B726 338 aaPredicted RBP10.32□□□□□ -0.76
CD44-205ENST00000352818 NLRP3Q96P20 1036 aa10.32□□□□□ -0.76
CD44-205ENST00000352818 BACH2Q9BYV9 841 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms