RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TBC1D2BQ9UPU7 963 aa22.88■■□□□ 1.25
COL9A3-201ENST00000343916 LIG1P18858 919 aa22.88■■□□□ 1.25
COL9A3-201ENST00000343916 FOXP2O15409 715 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 HAND2P61296 217 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 FAM184AQ8NB25 1140 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 SPATA32Q96LK8 384 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 NCOA5Q9HCD5 579 aaKnown RBP22.87■■□□□ 1.25
COL9A3-201ENST00000343916 RIPOR2Q9Y4F9 1068 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.87■■□□□ 1.25
COL9A3-201ENST00000343916 DISP2A7MBM2 1401 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 PFKFB2O60825 505 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 FUCA2Q9BTY2 467 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 TRMT112Q9UI30 125 aaKnown RBP22.87■■□□□ 1.25
COL9A3-201ENST00000343916 RIC1Q4ADV7 1423 aa22.87■■□□□ 1.25
COL9A3-201ENST00000343916 H3BQV1 296 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 EXOC5O00471 708 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 RRP9O43818 475 aaKnown RBP22.86■■□□□ 1.25
COL9A3-201ENST00000343916 CTDNEP1O95476 244 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 CAMK4Q16566 473 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 ATP2B3Q16720 1220 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 IFFO2Q5TF58 517 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 PUS7LQ9H0K6 701 aaKnown RBP22.86■■□□□ 1.25
COL9A3-201ENST00000343916 IRS4O14654 1257 aaPredicted RBP22.86■■□□□ 1.25
COL9A3-201ENST00000343916 ELP1O95163 1332 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 CTSWP56202 376 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 MPNDQ8N594 471 aa22.86■■□□□ 1.25
COL9A3-201ENST00000343916 NSUN7Q8NE18 718 aaKnown RBP22.86■■□□□ 1.25
COL9A3-201ENST00000343916 CDHR2Q9BYE9 1310 aa22.85■■□□□ 1.25
COL9A3-201ENST00000343916 A0A0G2JS52 829 aa22.85■■□□□ 1.25
COL9A3-201ENST00000343916 LEO1Q8WVC0 666 aaPredicted RBP22.85■■□□□ 1.25
COL9A3-201ENST00000343916 SCAND2PQ9GZW5 306 aaPredicted RBP22.85■■□□□ 1.25
COL9A3-201ENST00000343916 SPEF2Q9C093 1822 aa22.85■■□□□ 1.25
COL9A3-201ENST00000343916 AHDC1Q5TGY3 1603 aaPredicted RBP22.85■■□□□ 1.25
COL9A3-201ENST00000343916 MCAMP43121 646 aa22.85■■□□□ 1.25
COL9A3-201ENST00000343916 RESTQ13127 1097 aa22.85■■□□□ 1.25
COL9A3-201ENST00000343916 SMARCC2Q8TAQ2 1214 aa22.85■■□□□ 1.25
COL9A3-201ENST00000343916 GPHNQ9NQX3 736 aaPredicted RBP22.85■■□□□ 1.25
COL9A3-201ENST00000343916 CNNM1Q9NRU3 951 aa22.85■■□□□ 1.25
COL9A3-201ENST00000343916 TICAM2Q86XR7 235 aa22.84■■□□□ 1.25
COL9A3-201ENST00000343916 AGXT2Q9BYV1 514 aa22.84■■□□□ 1.25
COL9A3-201ENST00000343916 PTPDC1A2A3K4 754 aa22.84■■□□□ 1.25
COL9A3-201ENST00000343916 ZKSCAN5Q9Y2L8 839 aa22.84■■□□□ 1.25
COL9A3-201ENST00000343916 ANKRD18BA2A2Z9 1011 aa22.83■■□□□ 1.25
COL9A3-201ENST00000343916 DZIP3Q86Y13 1208 aaKnown RBP22.83■■□□□ 1.25
COL9A3-201ENST00000343916 CCDC39Q9UFE4 941 aa22.83■■□□□ 1.25
COL9A3-201ENST00000343916 UBN2Q6ZU65 1347 aa22.83■■□□□ 1.24
COL9A3-201ENST00000343916 GOLGA6L4A6NEF3 574 aa22.83■■□□□ 1.24
COL9A3-201ENST00000343916 FGAP02671 866 aa22.83■■□□□ 1.24
COL9A3-201ENST00000343916 PTMAP06454 111 aaKnown RBP22.83■■□□□ 1.24
COL9A3-201ENST00000343916 CEBPZQ03701 1054 aaKnown RBP22.82■■□□□ 1.24
COL9A3-201ENST00000343916 UVSSAQ2YD98 709 aa22.82■■□□□ 1.24
COL9A3-201ENST00000343916 DACT1Q9NYF0 836 aa22.82■■□□□ 1.24
COL9A3-201ENST00000343916 LRP6O75581 1613 aa22.82■■□□□ 1.24
COL9A3-201ENST00000343916 PDIA3P30101 505 aaKnown RBP22.82■■□□□ 1.24
COL9A3-201ENST00000343916 LRRFIP1Q32MZ4 808 aaKnown RBP22.82■■□□□ 1.24
COL9A3-201ENST00000343916 APPBP2Q92624 585 aa22.82■■□□□ 1.24
COL9A3-201ENST00000343916 LLPHQ9BRT6 129 aaKnown RBP22.82■■□□□ 1.24
COL9A3-201ENST00000343916 ZFYP08048 801 aaPredicted RBP22.81■■□□□ 1.24
COL9A3-201ENST00000343916 PGBD1Q96JS3 809 aa22.81■■□□□ 1.24
COL9A3-201ENST00000343916 PLCB2Q00722 1185 aa22.81■■□□□ 1.24
COL9A3-201ENST00000343916 GLIPR1L2Q4G1C9 344 aa22.81■■□□□ 1.24
COL9A3-201ENST00000343916 NUP62CLQ9H1M0 184 aa22.81■■□□□ 1.24
COL9A3-201ENST00000343916 FAM177BA6PVY3 158 aa22.8■■□□□ 1.24
COL9A3-201ENST00000343916 ADCY5O95622 1261 aa22.8■■□□□ 1.24
COL9A3-201ENST00000343916 TPM2P07951 284 aa22.8■■□□□ 1.24
COL9A3-201ENST00000343916 VGLL2Q8N8G2 317 aa22.8■■□□□ 1.24
COL9A3-201ENST00000343916 NWD2Q9ULI1 1742 aa22.8■■□□□ 1.24
COL9A3-201ENST00000343916 GPAA1O43292 621 aa22.8■■□□□ 1.24
COL9A3-201ENST00000343916 IMMTQ16891 758 aaKnown RBP22.8■■□□□ 1.24
COL9A3-201ENST00000343916 CKAP2LQ8IYA6 745 aa22.8■■□□□ 1.24
COL9A3-201ENST00000343916 HELBQ8NG08 1087 aaPredicted RBP22.8■■□□□ 1.24
COL9A3-201ENST00000343916 FTOQ9C0B1 505 aaKnown RBP eCLIP22.8■■□□□ 1.242e-9■□□□□ 10.3
COL9A3-201ENST00000343916 GUCY1B3Q02153 619 aa22.79■■□□□ 1.24
COL9A3-201ENST00000343916 COL14A1Q05707 1796 aaKnown RBP22.79■■□□□ 1.24
COL9A3-201ENST00000343916 NUP98P52948 1817 aa22.79■■□□□ 1.24
COL9A3-201ENST00000343916 PDE8AO60658 829 aa22.79■■□□□ 1.24
COL9A3-201ENST00000343916 NR1I2O75469 434 aa22.78■■□□□ 1.24
COL9A3-201ENST00000343916 CCDC192P0DO97 292 aa22.78■■□□□ 1.24
COL9A3-201ENST00000343916 BICD2Q8TD16 824 aa22.78■■□□□ 1.24
COL9A3-201ENST00000343916 ZSCAN16Q9H4T2 348 aaPredicted RBP22.78■■□□□ 1.24
COL9A3-201ENST00000343916 CTNNA3Q9UI47 895 aa22.78■■□□□ 1.24
COL9A3-201ENST00000343916 PDE8BO95263 885 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 IL6STP40189 918 aaPredicted RBP22.77■■□□□ 1.24
COL9A3-201ENST00000343916 MAP3K11Q16584 847 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 ACSBG1Q96GR2 724 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 SALL1Q9NSC2 1324 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 ZNF500O60304 480 aaPredicted RBP22.77■■□□□ 1.24
COL9A3-201ENST00000343916 OFD1O75665 1012 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 ADAMTS2O95450 1211 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 PHKA1P46020 1223 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 HMGN5P82970 282 aaKnown RBP22.77■■□□□ 1.24
COL9A3-201ENST00000343916 SLC9C2Q5TAH2 1124 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 RAB11FIP4Q86YS3 637 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 ZNF274Q96GC6 653 aaPredicted RBP22.77■■□□□ 1.24
COL9A3-201ENST00000343916 TNMDQ9H2S6 317 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 MYH3P11055 1940 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 AKAP11Q9UKA4 1901 aa22.77■■□□□ 1.24
COL9A3-201ENST00000343916 SNAP23O00161 211 aa22.76■■□□□ 1.23
COL9A3-201ENST00000343916 KDM4AO75164 1064 aa22.76■■□□□ 1.23
COL9A3-201ENST00000343916 IDH1O75874 414 aaKnown RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms