RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 PDE3BQ13370 1112 aa6.31□□□□□ -1.4
CD44-202ENST00000278385 PDE12Q6L8Q7 609 aaKnown RBP6.31□□□□□ -1.4
CD44-202ENST00000278385 ZNF662Q6ZS27 426 aa6.31□□□□□ -1.4
CD44-202ENST00000278385 CHSY3Q70JA7 882 aa6.31□□□□□ -1.4
CD44-202ENST00000278385 DHX32Q7L7V1 743 aaKnown RBP6.31□□□□□ -1.4
CD44-202ENST00000278385 GIPC2Q8TF65 315 aa6.31□□□□□ -1.4
CD44-202ENST00000278385 PMEPA1Q969W9 287 aa6.31□□□□□ -1.4
CD44-202ENST00000278385 PPME1Q9Y570 386 aa6.31□□□□□ -1.4
CD44-202ENST00000278385 PRG4Q92954 1404 aaPredicted RBP6.31□□□□□ -1.4
CD44-202ENST00000278385 ELMSAN1Q6PJG2 1045 aa6.3□□□□□ -1.4
CD44-202ENST00000278385 FAM35AQ86V20 835 aa6.3□□□□□ -1.4
CD44-202ENST00000278385 ATCAYQ86WG3 371 aa6.3□□□□□ -1.4
CD44-202ENST00000278385 FCHSD1Q86WN1 690 aa6.3□□□□□ -1.4
CD44-202ENST00000278385 EXOC8Q8IYI6 725 aa6.3□□□□□ -1.4
CD44-202ENST00000278385 MYH16Q9H6N6 1097 aa6.3□□□□□ -1.4
CD44-202ENST00000278385 DNAJB12Q9NXW2 375 aaKnown RBP6.3□□□□□ -1.4
CD44-202ENST00000278385 ABI2Q9NYB9 513 aaPredicted RBP6.3□□□□□ -1.4
CD44-202ENST00000278385 TLR7Q9NYK1 1049 aaKnown RBP6.3□□□□□ -1.4
CD44-202ENST00000278385 CEP170Q5SW79 1584 aa6.3□□□□□ -1.4
CD44-202ENST00000278385 ZBTB39O15060 712 aa6.29□□□□□ -1.4
CD44-202ENST00000278385 RGS9O75916 674 aaPredicted RBP6.29□□□□□ -1.4
CD44-202ENST00000278385 ARHGEF15O94989 841 aa6.29□□□□□ -1.4
CD44-202ENST00000278385 NPR3P17342 541 aa6.29□□□□□ -1.4
CD44-202ENST00000278385 IRX6P78412 446 aaPredicted RBP6.29□□□□□ -1.4
CD44-202ENST00000278385 HYAL2Q12891 473 aa6.29□□□□□ -1.4
CD44-202ENST00000278385 GRIN2CQ14957 1233 aa6.29□□□□□ -1.4
CD44-202ENST00000278385 MICAL1Q8TDZ2 1067 aa6.29□□□□□ -1.4
CD44-202ENST00000278385 NOP53Q9NZM5 478 aaKnown RBP6.29□□□□□ -1.4
CD44-202ENST00000278385 SUGT1Q9Y2Z0 365 aa6.29□□□□□ -1.4
CD44-202ENST00000278385 KIAA0586Q9BVV6 1533 aa6.29□□□□□ -1.4
CD44-202ENST00000278385 LILRB5O75023 590 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 PDGFAP04085 211 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 CPB1P15086 417 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 EIF2AK2P19525 551 aaKnown RBP6.28□□□□□ -1.4
CD44-202ENST00000278385 NRLP54845 237 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 DPH6Q7L8W6 267 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 CITED4Q96RK1 184 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 ELP3Q9H9T3 547 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 KLF15Q9UIH9 416 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 SLC6A14Q9UN76 642 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 POLIQ9UNA4 740 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 KCNMB2Q9Y691 235 aa6.28□□□□□ -1.4
CD44-202ENST00000278385 SHISA8B8ZZ34 492 aa6.27□□□□□ -1.41
CD44-202ENST00000278385 GNB5O14775 395 aa6.27□□□□□ -1.41
CD44-202ENST00000278385 TPD52L2O43399 206 aaKnown RBP6.27□□□□□ -1.41
CD44-202ENST00000278385 CES1P23141 567 aa6.27□□□□□ -1.41
CD44-202ENST00000278385 SOX18P35713 384 aa6.27□□□□□ -1.41
CD44-202ENST00000278385 GPLD1P80108 840 aa6.27□□□□□ -1.41
CD44-202ENST00000278385 NOP9Q86U38 636 aaKnown RBP6.27□□□□□ -1.41
CD44-202ENST00000278385 NCAPG2Q86XI2 1143 aa6.27□□□□□ -1.41
CD44-202ENST00000278385 TRPM4Q8TD43 1214 aa6.27□□□□□ -1.41
CD44-202ENST00000278385 JPH1Q9HDC5 661 aaPredicted RBP6.27□□□□□ -1.41
CD44-202ENST00000278385 LOC102724428A0A0B4J2F2 783 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 SOWAHDA6NJG2 315 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 M0R082 166 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 MMP20O60882 483 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 RAB11FIP3O75154 756 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 SIK1P57059 783 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 ZNF326Q5BKZ1 582 aaKnown RBP6.26□□□□□ -1.41
CD44-202ENST00000278385 PRRT3Q5FWE3 981 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 PSAPL1Q6NUJ1 521 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 ZNF417Q8TAU3 575 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 ZNF587Q96SQ5 575 aaPredicted RBP6.26□□□□□ -1.41
CD44-202ENST00000278385 SLC52A1Q9NWF4 448 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 ZFATQ9P243 1243 aa6.26□□□□□ -1.41
CD44-202ENST00000278385 PHACTR2O75167 634 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 MLLT1Q03111 559 aaPredicted RBP6.25□□□□□ -1.41
CD44-202ENST00000278385 TRIP4Q15650 581 aaPredicted RBP6.25□□□□□ -1.41
CD44-202ENST00000278385 FAM26DQ5JW98 314 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 GORABQ5T7V8 394 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 XKR5Q6UX68 686 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 C1orf229Q6ZS94 237 aaPredicted RBP6.25□□□□□ -1.41
CD44-202ENST00000278385 ALYREFQ86V81 257 aaKnown RBP6.25□□□□□ -1.41
CD44-202ENST00000278385 NPAS4Q8IUM7 802 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 TEX2Q8IWB9 1127 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 SNX29Q8TEQ0 813 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 NUDT8Q8WV74 236 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 NSUN5Q96P11 429 aaKnown RBP6.25□□□□□ -1.41
CD44-202ENST00000278385 HCN2Q9UL51 889 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 ERCC6L2Q5T890 1561 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 SHROOM2Q13796 1616 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 PTPRGP23470 1445 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 CARMIL2Q6F5E8 1435 aa6.25□□□□□ -1.41
CD44-202ENST00000278385 RAPGEF2Q9Y4G8 1499 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 TNIKQ9UKE5 1360 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 SMNDC1O75940 238 aaKnown RBP eCLIP6.24□□□□□ -1.41
CD44-202ENST00000278385 LORP23490 312 aaPredicted RBP6.24□□□□□ -1.41
CD44-202ENST00000278385 IRS1P35568 1242 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 RAC1P63000 192 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 TRIM28Q13263 835 aaKnown RBP6.24□□□□□ -1.41
CD44-202ENST00000278385 TRAPPC3LQ5T215 181 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 HFE2Q6ZVN8 426 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 ZSCAN29Q8IWY8 852 aaPredicted RBP6.24□□□□□ -1.41
CD44-202ENST00000278385 CACTIN-AS1Q8N1I8 211 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 OR13H1Q8NG92 308 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 CCDC87Q9NVE4 849 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 FRRS1LQ9P0K9 344 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 CNTNAP5Q8WYK1 1306 aa6.24□□□□□ -1.41
CD44-202ENST00000278385 CUL7Q14999 1698 aa6.23□□□□□ -1.41
CD44-202ENST00000278385 SBNO2Q9Y2G9 1366 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms