RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SFXN2Q96NB2 322 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 GUCD1Q96NT3 240 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 CHST6Q9GZX3 395 aa13.11□□□□□ -0.31
NUP54-217ENST00000514987 ZMAT3Q9HA38 289 aaKnown RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 FARSAQ9Y285 508 aaKnown RBP13.11□□□□□ -0.31
NUP54-217ENST00000514987 PHF3Q92576 2039 aaKnown RBP13.1□□□□□ -0.31
NUP54-217ENST00000514987 TRIOO75962 3097 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 RPS10-NUDT3A0A1W2PQS6 291 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 IFNA6P05013 189 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 ZNF883P0CG24 379 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 PRF1P14222 555 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 PPP3CBP16298 524 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 ABOP16442 354 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 HLA-GP17693 338 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 ALDH3B1P43353 468 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 RAC3P60763 192 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 ENDOGQ14249 297 aaKnown RBP13.1□□□□□ -0.31
NUP54-217ENST00000514987 ARL6IP1Q15041 203 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 ZNF528Q3MIS6 628 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 SCGB2B2Q4G0G5 96 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 NAXDQ8IW45 347 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 OR13C8Q8NGS7 320 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 SPTSSAQ969W0 71 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 JSRP1Q96MG2 331 aaPredicted RBP13.1□□□□□ -0.31
NUP54-217ENST00000514987 CST11Q9H112 138 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 LPAR5Q9H1C0 372 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 KCNN3Q9UGI6 736 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 PADI1Q9ULC6 663 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 ANAPC10Q9UM13 185 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 FLVCR1Q9Y5Y0 555 aa13.1□□□□□ -0.31
NUP54-217ENST00000514987 WIPF3A6NGB9 483 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 RFPL4AA6NLU0 287 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 RFPL4AL1F8VTS6 287 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 MTRF1O75570 445 aaKnown RBP13.09□□□□□ -0.31
NUP54-217ENST00000514987 RP2O75695 350 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 WDPCPO95876 746 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 HPP00738 406 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 PDGFBP01127 241 aaPredicted RBP13.09□□□□□ -0.31
NUP54-217ENST00000514987 FCER2P06734 321 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 RPA2P15927 270 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 NAT1P18440 290 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 CD34P28906 385 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 CASRP41180 1078 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 AP2S1P53680 142 aaPredicted RBP13.09□□□□□ -0.31
NUP54-217ENST00000514987 TAS2R31P59538 309 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 MRPS34P82930 218 aaKnown RBP13.09□□□□□ -0.31
NUP54-217ENST00000514987 SIGLEC14Q08ET2 396 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 C2orf68Q2NKX9 166 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 TMUB2Q71RG4 321 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 Q7L0L9 218 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 NAA40Q86UY6 237 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 C20orf196Q8IYI0 205 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 SSC4DQ8WTU2 575 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 RAB3CQ96E17 227 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 GPER1Q99527 375 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 TMEM59Q9BXS4 323 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 ULBP2Q9BZM5 246 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 SELENOIQ9C0D9 397 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 FOXD3Q9UJU5 478 aaPredicted RBP13.09□□□□□ -0.31
NUP54-217ENST00000514987 MRPS18CQ9Y3D5 142 aaKnown RBP13.09□□□□□ -0.31
NUP54-217ENST00000514987 V9GYS6 101 aa13.09□□□□□ -0.31
NUP54-217ENST00000514987 EYSQ5T1H1 3165 aa13.08□□□□□ -0.31
NUP54-217ENST00000514987 CDC14BO60729 498 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 B3GALNT1O75752 331 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 STK17BO94768 372 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 SIX6O95475 246 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 CD8AP01732 235 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 SLC2A1P11166 492 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 KLK2P20151 261 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 ENPP1P22413 925 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 CALCRP30988 508 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 HOXD11P31277 338 aaPredicted RBP13.08□□□□□ -0.32
NUP54-217ENST00000514987 OTX1P32242 354 aaPredicted RBP13.08□□□□□ -0.32
NUP54-217ENST00000514987 UBE2MP61081 183 aaKnown RBP13.08□□□□□ -0.32
NUP54-217ENST00000514987 DHRS2Q13268 280 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 HLXQ14774 488 aaPredicted RBP13.08□□□□□ -0.32
NUP54-217ENST00000514987 FAM27BQ5VT28 67 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 H3F3CQ6NXT2 135 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 TMEM65Q6PI78 240 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 PPP1R32Q7Z5V6 425 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 LYG2Q86SG7 212 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 BEST3Q8N1M1 668 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 STEAP2Q8NFT2 490 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 OR5M8Q8NGP6 311 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 NABP1Q96AH0 204 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 CMBLQ96DG6 245 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 C1orf147Q96MC9 270 aaPredicted RBP13.08□□□□□ -0.32
NUP54-217ENST00000514987 SLX1AQ9BQ83 275 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 STRADBQ9C0K7 418 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.08□□□□□ -0.32
NUP54-217ENST00000514987 ZNF319Q9P2F9 582 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 FBXO4Q9UKT5 387 aa13.08□□□□□ -0.32
NUP54-217ENST00000514987 FXYD6-FXYD2A0A087WZ82 144 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 A0A0J9YW62 118 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 DHRS7CA6NNS2 312 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 ARPC5O15511 151 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 DHRS3O75911 302 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 MPIG6BO95866 241 aa13.07□□□□□ -0.32
NUP54-217ENST00000514987 CFDP00746 253 aaPredicted RBP13.07□□□□□ -0.32
NUP54-217ENST00000514987 IL2RAP01589 272 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms