RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CYB5R1Q9UHQ9 305 aa17.48■□□□□ 0.39
SDC1-205ENST00000447124 A0A0G2JMP0 313 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 A0A0X1KG70 313 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 RGS9O75916 674 aaPredicted RBP17.47■□□□□ 0.39
SDC1-205ENST00000447124 ACSM4P0C7M7 580 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 ADRA2CP18825 462 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 NOS3P29474 1203 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 PYCR1P32322 319 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 MAGEA2P43356 314 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 MS4A2Q01362 244 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 ZMYND11Q15326 602 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 SLC36A3Q495N2 470 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 DCAF12L2Q5VW00 463 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.47■□□□□ 0.39
SDC1-205ENST00000447124 SEMA6DQ8NFY4 1073 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 OR4M2Q8NGB6 313 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 OR8D4Q8NGM9 314 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 TRIM15Q9C019 465 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 GCM1Q9NP62 436 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 MMP26Q9NRE1 261 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 PPP1R3CQ9UQK1 317 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 CDH10Q9Y6N8 788 aa17.47■□□□□ 0.39
SDC1-205ENST00000447124 A0A0A6YYJ9 748 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 F5H5K5 113 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 TMEM178BH3BS89 294 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 BHLHE40O14503 412 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 MLNRO43193 412 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 T-ENOLP0DO92 83 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 PRSS12P56730 875 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 C1QL2Q7Z5L3 287 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 CYB561A3Q8NBI2 242 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 OR10S1Q8NGN2 331 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 MAP6Q96JE9 813 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 MEGF10Q96KG7 1140 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 PITX2Q99697 317 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 SLC30A2Q9BRI3 323 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 CDADC1Q9BWV3 514 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 C7orf69Q9H7B7 122 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 PATZ1Q9HBE1 687 aaKnown RBP17.46■□□□□ 0.39
SDC1-205ENST00000447124 VNN3Q9NY84 501 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 IL20Q9NYY1 176 aa17.46■□□□□ 0.39
SDC1-205ENST00000447124 IQCF6A8MYZ5 107 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 TRAPPC2LH3BP13 241 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 J3QLI3 93 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 SURF4O15260 269 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 HLA-DQA2P01906 255 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 PSKH1P11801 424 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 EPHA1P21709 976 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 PMELP40967 661 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 RPS27P42677 84 aaKnown RBP17.45■□□□□ 0.38
SDC1-205ENST00000447124 SLC6A9P48067 706 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 SEC61A1P61619 476 aaKnown RBP17.45■□□□□ 0.38
SDC1-205ENST00000447124 TMEM155Q4W5P6 130 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 LYPD4Q6UWN0 246 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 OR10AD1Q8NGE0 317 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 OR2AJ1Q8NGZ0 328 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 OR13G1Q8NGZ3 307 aa17.45■□□□□ 0.38
SDC1-205ENST00000447124 ZNF420Q8TAQ5 688 aaPredicted RBP17.45■□□□□ 0.38
SDC1-205ENST00000447124 ZNF582Q96NG8 517 aaPredicted RBP17.45■□□□□ 0.38
SDC1-205ENST00000447124 IGHV3-64DA0A0J9YX35 117 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 TVP23AA6NH52 213 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 FOXH1O75593 365 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 ANOS1P23352 680 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 MMP16P51512 607 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 MNAT1P51948 309 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 BTG1P62324 171 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 TRAP1Q12931 704 aaKnown RBP17.44■□□□□ 0.38
SDC1-205ENST00000447124 ECH1Q13011 328 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 GK2Q14410 553 aaPredicted RBP17.44■□□□□ 0.38
SDC1-205ENST00000447124 SLC27A4Q6P1M0 643 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 RASSF6Q6ZTQ3 369 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 SLC37A3Q8NCC5 494 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 OR51L1Q8NGJ5 315 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 ST7LQ8TDW4 575 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 ATF6BQ99941 703 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 PCDHB10Q9UN67 800 aa17.44■□□□□ 0.38
SDC1-205ENST00000447124 PPIAL4EA0A075B759 164 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 PPIAL4CA0A0B4J2A2 164 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 A0A1B0GWJ7 208 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 F5H0A9 414 aaPredicted RBP17.43■□□□□ 0.38
SDC1-205ENST00000447124 PPIAL4DF5H284 164 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 F5H5P2 479 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 CCNB2O95067 398 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 ZNF205O95201 554 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 FSHBP01225 129 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 HLA-DPB1P04440 258 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 PPIAL4FP0DN26 164 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 GATA3P23771 443 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 TRIM25Q14258 630 aaKnown RBP17.43■□□□□ 0.38
SDC1-205ENST00000447124 LCN8Q6JVE9 175 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 LINC00471Q8N535 108 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 SPICQ8N5J4 248 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 BHLHE23Q8NDY6 225 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 OR4Q3Q8NH05 313 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 NANPQ8TBE9 248 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 TMEM165Q9HC07 324 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 TMEM100Q9NV29 134 aa17.43■□□□□ 0.38
SDC1-205ENST00000447124 POLR3KQ9Y2Y1 108 aaPredicted RBP17.43■□□□□ 0.38
SDC1-205ENST00000447124 C5orf63A6NC05 138 aa17.42■□□□□ 0.38
SDC1-205ENST00000447124 CYB5R3P00387 301 aaPredicted RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms