RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	SSY5	P47002	699 aa		4.83	□□□□□ -1.64
CTK1	YKL139W	YJR039W	P47107	1121 aa		4.83	□□□□□ -1.64
CTK1	YKL139W	RNR4	P49723	345 aa	Known RBP	4.83	□□□□□ -1.64
CTK1	YKL139W	PSP2	P50109	593 aa	Known RBP	4.83	□□□□□ -1.64
CTK1	YKL139W	MCA1	Q08601	432 aa		4.83	□□□□□ -1.64
CTK1	YKL139W	NKP1	Q12493	238 aa		4.83	□□□□□ -1.64
CTK1	YKL139W	PTH2	P34222	208 aa		4.82	□□□□□ -1.64
CTK1	YKL139W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
CTK1	YKL139W	SPE1	P08432	466 aa		4.82	□□□□□ -1.64
CTK1	YKL139W	SWI6	P09959	803 aa		4.82	□□□□□ -1.64
CTK1	YKL139W	YKR075C	P36155	307 aa		4.82	□□□□□ -1.64
CTK1	YKL139W	MND2	P40577	368 aa		4.82	□□□□□ -1.64
CTK1	YKL139W	FOL2	P51601	243 aa	Known RBP	4.82	□□□□□ -1.64
CTK1	YKL139W	YGR130C	P53278	816 aa		4.82	□□□□□ -1.64
CTK1	YKL139W	BRE5	P53741	515 aa	Known RBP	4.82	□□□□□ -1.64
CTK1	YKL139W	LPX1	Q12405	387 aa	Known RBP	4.82	□□□□□ -1.64
CTK1	YKL139W	CYC1	P00044	109 aa	Predicted RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	GLN4	P13188	809 aa	Known RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	KAE1	P36132	386 aa		4.81	□□□□□ -1.64
CTK1	YKL139W	MIP6	P38760	659 aa	Known RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	YHR078W	P38799	552 aa		4.81	□□□□□ -1.64
CTK1	YKL139W	CTF8	P38877	133 aa		4.81	□□□□□ -1.64
CTK1	YKL139W	MTR3	P48240	250 aa	Predicted RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	PAP2	P53632	584 aa	Known RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	CNM67	P53865	581 aa	Known RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	GPD1	Q00055	391 aa	Known RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	LEE1	Q02799	301 aa	Known RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	YPL034W	Q03083	165 aa		4.81	□□□□□ -1.64
CTK1	YKL139W	ASM4	Q05166	528 aa		4.81	□□□□□ -1.64
CTK1	YKL139W	WHI4	Q07655	649 aa	Known RBP	4.81	□□□□□ -1.64
CTK1	YKL139W	YPR053C	Q6Q5F3	151 aa		4.81	□□□□□ -1.64
CTK1	YKL139W	GAL10	P04397	699 aa		4.8	□□□□□ -1.64
CTK1	YKL139W	MSS18	P08593	268 aa		4.8	□□□□□ -1.64
CTK1	YKL139W	DBF20	P32328	564 aa		4.8	□□□□□ -1.64
CTK1	YKL139W	SAK1	P38990	1142 aa		4.8	□□□□□ -1.64
CTK1	YKL139W	BEM4	P39011	633 aa		4.8	□□□□□ -1.64
CTK1	YKL139W	SDP1	P40479	209 aa		4.8	□□□□□ -1.64
CTK1	YKL139W	QRI7	P43122	407 aa		4.8	□□□□□ -1.64
CTK1	YKL139W	TMA64	Q04600	565 aa	Known RBP	4.8	□□□□□ -1.64
CTK1	YKL139W	YLR407W	Q06070	228 aa		4.8	□□□□□ -1.64
CTK1	YKL139W	EXO84	P38261	753 aa		4.79	□□□□□ -1.64
CTK1	YKL139W	YHR202W	P38887	602 aa		4.79	□□□□□ -1.64
CTK1	YKL139W	VID28	P40547	921 aa		4.79	□□□□□ -1.64
CTK1	YKL139W	NOP15	P53927	220 aa	Predicted RBP	4.79	□□□□□ -1.64
CTK1	YKL139W	CEG1	Q01159	459 aa	Predicted RBP	4.79	□□□□□ -1.64
CTK1	YKL139W	OMS1	Q06668	471 aa		4.79	□□□□□ -1.64
CTK1	YKL139W	YOL114C	Q12322	202 aa		4.79	□□□□□ -1.64
CTK1	YKL139W	CYC7	P00045	113 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	ATG19	P35193	415 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	AKL1	P38080	1108 aa	Known RBP	4.78	□□□□□ -1.64
CTK1	YKL139W	SKN7	P38889	622 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	ACA1	P39970	489 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	VID27	P40157	782 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	HOL1	P53389	586 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	ORC4	P54791	529 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	TPO1	Q07824	586 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	CWC2	Q12046	339 aa	Predicted RBP	4.78	□□□□□ -1.64
CTK1	YKL139W	NUR1	Q12066	484 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	GPR1	Q12361	961 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	CDC26	P14724	124 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	PHO81	P17442	1178 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	RPA135	P22138	1203 aa	Known RBP	4.78	□□□□□ -1.64
CTK1	YKL139W	PZF1	P39933	429 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	EAF5	P39995	279 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	YIL092W	P40497	633 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	SAP185	P40856	1058 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	SET2	P46995	733 aa	Known RBP	4.78	□□□□□ -1.64
CTK1	YKL139W	GTF1	P53260	183 aa	Predicted RBP	4.78	□□□□□ -1.64
CTK1	YKL139W	YMR210W	Q03649	449 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	PSR2	Q07949	397 aa		4.78	□□□□□ -1.64
CTK1	YKL139W	NGL1	Q08213	363 aa	Known RBP	4.78	□□□□□ -1.64
CTK1	YKL139W	RPS17A	P02407	136 aa	Known RBP	4.77	□□□□□ -1.65
CTK1	YKL139W	RPS17B	P14127	136 aa	Known RBP	4.77	□□□□□ -1.65
CTK1	YKL139W	IMG2	P25642	146 aa	Predicted RBP	4.77	□□□□□ -1.65
CTK1	YKL139W	HXT4	P32467	576 aa		4.77	□□□□□ -1.65
CTK1	YKL139W	PFA3	P42836	336 aa		4.77	□□□□□ -1.65
CTK1	YKL139W	ASK10	P48361	1146 aa		4.77	□□□□□ -1.65
CTK1	YKL139W	GCV2	P49095	1034 aa		4.77	□□□□□ -1.65
CTK1	YKL139W	MUS81	Q04149	632 aa	Predicted RBP	4.77	□□□□□ -1.65
CTK1	YKL139W	HIM1	Q06674	414 aa		4.77	□□□□□ -1.65
CTK1	YKL139W	UPC2	Q12151	913 aa		4.77	□□□□□ -1.65
CTK1	YKL139W	SEC18	P18759	758 aa	Known RBP	4.76	□□□□□ -1.65
CTK1	YKL139W	HOP1	P20050	605 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	PHO3	P24031	467 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	SED4	P25365	1065 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	APN2	P38207	520 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	ETP1	P38748	585 aa	Known RBP	4.76	□□□□□ -1.65
CTK1	YKL139W	ERP2	P39704	215 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	ORC3	P54790	616 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	PLB2	Q03674	706 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	YPS7	Q06325	596 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	ADY3	Q07732	790 aa		4.76	□□□□□ -1.65
CTK1	YKL139W	SSH4	P32343	579 aa		4.75	□□□□□ -1.65
CTK1	YKL139W	STE14	P32584	239 aa		4.75	□□□□□ -1.65
CTK1	YKL139W	SRP68	P38687	599 aa	Known RBP	4.75	□□□□□ -1.65
CTK1	YKL139W	DUN1	P39009	513 aa		4.75	□□□□□ -1.65
CTK1	YKL139W	SAW1	P39735	261 aa		4.75	□□□□□ -1.65
CTK1	YKL139W	RPT2	P40327	437 aa	Known RBP	4.75	□□□□□ -1.65
CTK1	YKL139W	VHR1	P40522	640 aa		4.75	□□□□□ -1.65
CTK1	YKL139W	URM1	P40554	99 aa	Predicted RBP	4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 10.1 ms