RNA–Protein interactions for RNA: YGL155W

CDC43, Transcript of Beta subunit of geranylgeranyltransferase type I, yeast

Gene CDC43, Length 1,131 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC43	YGL155W	SEC21	P32074	935 aa	Known RBP	5.74	□□□□□ -1.49
CDC43	YGL155W	VPS35	P34110	944 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	YKL050C	P35736	922 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	OAF3	P36023	863 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	YHL049C	P38722	271 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	YEL075C	P39972	122 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	LCP5	P40079	357 aa	Predicted RBP	5.74	□□□□□ -1.49
CDC43	YGL155W	YER189W	P40104	122 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	SAP185	P40856	1058 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	AAD14	P42884	376 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	YFL064C	P43540	174 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	CPR6	P53691	371 aa	Known RBP	5.74	□□□□□ -1.49
CDC43	YGL155W	PHM6	Q05637	104 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	MRX10	Q05648	414 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	TAF10	Q12030	206 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	YBL111C	Q3E7Y5	667 aa		5.74	□□□□□ -1.49
CDC43	YGL155W	PGK1	P00560	416 aa	Known RBP	5.73	□□□□□ -1.49
CDC43	YGL155W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	5.73	□□□□□ -1.49	not detected
CDC43	YGL155W	STE6	P12866	1290 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	PRP16	P15938	1071 aa	Predicted RBP	5.73	□□□□□ -1.49
CDC43	YGL155W	SPO16	P17122	198 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	5.73	□□□□□ -1.49	not detected
CDC43	YGL155W	UGA4	P32837	571 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	TFC4	P33339	1025 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	YKL023W	P36103	277 aa	Known RBP	5.73	□□□□□ -1.49
CDC43	YGL155W	HIS2	P38635	335 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	SHC1	P39000	512 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	INA22	P40576	216 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	YNL320W	P42840	284 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	HUL5	P53119	910 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	LIF1	P53150	421 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	NCS2	P53923	493 aa	Predicted RBP	5.73	□□□□□ -1.49
CDC43	YGL155W	TIM8	P57744	87 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	UTP6	Q02354	440 aa	Known RBP	5.73	□□□□□ -1.49
CDC43	YGL155W	DIG1	Q03063	452 aa	Known RBP	5.73	□□□□□ -1.49
CDC43	YGL155W	MTG1	Q03151	367 aa	Predicted RBP	5.73	□□□□□ -1.49
CDC43	YGL155W	YMR187C	Q03236	431 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	DON1	Q05610	365 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.73	□□□□□ -1.49	not detected
CDC43	YGL155W	SDH5	Q08230	162 aa		5.73	□□□□□ -1.49
CDC43	YGL155W	FLO11	P08640	1367 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	TY1B-A	O13527	1196 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	ARG4	P04076	463 aa	Predicted RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	CDC33	P07260	213 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	TCP1	P12612	559 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	DBP5	P20449	482 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	PRP22	P24384	1145 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	KIP1	P28742	1111 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	EUG1	P32474	517 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	SUV3	P32580	737 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	ATG19	P35193	415 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	TRZ1	P36159	838 aa	Predicted RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	RRT2	P38332	387 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	TIF5	P38431	405 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	MRX1	P40050	688 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	RIO2	P40160	425 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	GPD2	P41911	440 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	MTC3	P53077	123 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	DIP5	P53388	608 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	ISU1	Q03020	165 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	YDR338C	Q05497	695 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	ISR1	Q06098	443 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	SUB2	Q07478	446 aa	Known RBP	5.72	□□□□□ -1.49
CDC43	YGL155W	NCA2	Q12374	616 aa		5.72	□□□□□ -1.49
CDC43	YGL155W	TUB2	P02557	457 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	PMR1	P13586	950 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	POL3	P15436	1097 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	PRP9	P19736	530 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	YCR051W	P25631	222 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	NAM7	P30771	971 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	DBF4	P32325	704 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	PLC1	P32383	869 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	RTG2	P32608	588 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	RAD5	P32849	1169 aa	Predicted RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	PGM2	P37012	569 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	ECM2	P38241	364 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	EXO5	P38289	585 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	MMS21	P38632	267 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	SOH1	P38633	127 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	TIF4631	P39935	952 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	KAP123	P40069	1113 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	YER156C	P40093	338 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	YTA12	P40341	825 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	FIS1	P40515	155 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	ULP2	P40537	1034 aa	Predicted RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	NUP85	P46673	744 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	URB2	P47108	1174 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	ILM1	P47155	203 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	ZPR1	P53303	486 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	ALD6	P54115	500 aa	Known RBP	5.71	□□□□□ -1.5
CDC43	YGL155W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.71	□□□□□ -1.5	RIP-Chip
CDC43	YGL155W	ATG16	Q03818	150 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	TDA9	Q04545	1251 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	ERV41	Q04651	352 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	PIG1	Q06216	648 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	RKM4	Q12504	494 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	SRF1	Q12516	437 aa		5.71	□□□□□ -1.5
CDC43	YGL155W	PYC1	P11154	1178 aa	Known RBP	5.7	□□□□□ -1.5
CDC43	YGL155W	PMS1	P14242	873 aa		5.7	□□□□□ -1.5
CDC43	YGL155W	MRPL25	P23369	157 aa		5.7	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms