RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CTNNA3Q9UI47 895 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 CLEC17AQ6ZS10 378 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 RUFY3Q7L099 469 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 MNS1Q8NEH6 495 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 XAGE3Q8WTP9 111 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 DRC1Q96MC2 740 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 FMNL2Q96PY5 1086 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 DEF6Q9H4E7 631 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 PNMA2Q9UL42 364 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 MROH1Q8NDA8 1641 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 MYO3AQ8NEV4 1616 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 TTC39AQ5SRH9 613 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 RPAINQ86UA6 219 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 SLC39A6Q13433 755 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 CUL4AQ13619 759 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 ZC3H13Q5T200 1668 aaKnown RBP12.11□□□□□ -0.47
LIG1-220ENST00000601091 CCDC171Q6TFL3 1326 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 UNC5CLQ8IV45 518 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 IFNL2Q8IZJ0 200 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 GOPCQ9HD26 462 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 DDX21Q9NR30 783 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIG1-220ENST00000601091 SNRPA1P09661 255 aaKnown RBP12.1□□□□□ -0.47
LIG1-220ENST00000601091 PPLO60437 1756 aa12.1□□□□□ -0.47
LIG1-220ENST00000601091 SUFUQ9UMX1 484 aa12.1□□□□□ -0.47
LIG1-220ENST00000601091 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.1□□□□□ -0.47
LIG1-220ENST00000601091 ATP5J2-PTCD1G3V325 749 aa12.1□□□□□ -0.47
LIG1-220ENST00000601091 PTCD1O75127 700 aaKnown RBP12.1□□□□□ -0.47
LIG1-220ENST00000601091 CAND2O75155 1236 aa12.1□□□□□ -0.47
LIG1-220ENST00000601091 GADD45BO75293 160 aaPredicted RBP12.1□□□□□ -0.47
LIG1-220ENST00000601091 GPBP1L1Q9HC44 474 aaPredicted RBP12.1□□□□□ -0.47
LIG1-220ENST00000601091 DIP2CQ9Y2E4 1556 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 PLEKHG1Q9ULL1 1385 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 NPHP1O15259 732 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 MARCH6O60337 910 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 AKAP17AQ02040 695 aaKnown RBP12.09□□□□□ -0.47
LIG1-220ENST00000601091 MYBPC2Q14324 1141 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 HOMER1Q86YM7 354 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 PIK3C2BO00750 1634 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 LIG1P18858 919 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 NOLC1Q14978 699 aaKnown RBP eCLIP12.09□□□□□ -0.474e-9■■■□□ 16.3
LIG1-220ENST00000601091 TOM1L2Q6ZVM7 507 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 HOOK1Q9UJC3 728 aaKnown RBP12.09□□□□□ -0.47
LIG1-220ENST00000601091 USP32Q8NFA0 1604 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 IFIT1P09914 478 aaKnown RBP12.09□□□□□ -0.47
LIG1-220ENST00000601091 SAFBQ15424 915 aaKnown RBP eCLIP12.09□□□□□ -0.47
LIG1-220ENST00000601091 BEND3Q5T5X7 828 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 BICC1Q9H694 974 aaKnown RBP12.09□□□□□ -0.47
LIG1-220ENST00000601091 FRMD4BQ9Y2L6 1034 aa12.09□□□□□ -0.47
LIG1-220ENST00000601091 CEP57L1Q8IYX8 460 aa12.08□□□□□ -0.48
LIG1-220ENST00000601091 RMI1Q9H9A7 625 aa12.08□□□□□ -0.48
LIG1-220ENST00000601091 COL3A1P02461 1466 aaPredicted RBP12.08□□□□□ -0.48
LIG1-220ENST00000601091 ZNF165P49910 485 aa12.08□□□□□ -0.48
LIG1-220ENST00000601091 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.08□□□□□ -0.484e-7■■■■□ 19.6
LIG1-220ENST00000601091 ZSCAN16Q9H4T2 348 aaPredicted RBP12.08□□□□□ -0.48
LIG1-220ENST00000601091 TBC1D2BQ9UPU7 963 aa12.08□□□□□ -0.48
LIG1-220ENST00000601091 FAM200AQ8TCP9 573 aa12.08□□□□□ -0.48
LIG1-220ENST00000601091 PRIMPOLQ96LW4 560 aa12.08□□□□□ -0.48
LIG1-220ENST00000601091 TM6SF1Q9BZW5 370 aa12.08□□□□□ -0.48
LIG1-220ENST00000601091 DACT1Q9NYF0 836 aa12.08□□□□□ -0.48
LIG1-220ENST00000601091 CTAGE5O15320 804 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 DDIT3P35638 169 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 MTA1Q13330 715 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 KIF6Q6ZMV9 814 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 BRF1Q92994 677 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 KCNQ3O43525 872 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 CAVIN2O95810 425 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 IMMTQ16891 758 aaKnown RBP12.07□□□□□ -0.48
LIG1-220ENST00000601091 DDX46Q7L014 1031 aaKnown RBP12.07□□□□□ -0.48
LIG1-220ENST00000601091 FILIP1Q7Z7B0 1213 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 CCDC112Q8NEF3 446 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 PRDM11Q9NQV5 511 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 ANAPC4Q9UJX5 808 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 RGS12O14924 1447 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 SMC2O95347 1197 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 CTR9Q6PD62 1173 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 NFATC2IPQ8NCF5 419 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 NBPF3Q9H094 633 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 NPHP3Q7Z494 1330 aa12.07□□□□□ -0.48
LIG1-220ENST00000601091 MCMDC2Q4G0Z9 681 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 ARL10Q8N8L6 244 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 JMYQ8N9B5 988 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 DLC1Q96QB1 1528 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 ERICH2A1L162 156 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 SYTL4Q96C24 671 aaPredicted RBP12.06□□□□□ -0.48
LIG1-220ENST00000601091 FAM227BQ96M60 508 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 TSPAN18Q96SJ8 248 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 CNNM1Q9NRU3 951 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 ADGRB2O60241 1585 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 TERF1P54274 439 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 ICE2Q659A1 982 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 MSL3Q8N5Y2 521 aaKnown RBP12.06□□□□□ -0.48
LIG1-220ENST00000601091 ANO10Q9NW15 660 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 AKAP2Q9Y2D5 859 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 CD163L1Q9NR16 1453 aa12.06□□□□□ -0.48
LIG1-220ENST00000601091 OLFM4Q6UX06 510 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 ITFG2Q969R8 447 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 SLC27A2O14975 620 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 GIGYF1O75420 1035 aaPredicted RBP12.05□□□□□ -0.48
LIG1-220ENST00000601091 GUCY1B3Q02153 619 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 FRMPD1Q5SYB0 1578 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms