RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 FNDC3AQ9Y2H6 1198 aaKnown RBP8.47□□□□□ -1.05
SMCHD1-205ENST00000581383 LOC102724428A0A0B4J2F2 783 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 FAM177BA6PVY3 158 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 ZBTB42B2RXF5 422 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 UBAP1LF5GYI3 381 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 J3QW42 95 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 SELPP16109 830 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 GRNP28799 593 aaKnown RBP8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 SIK1P57059 783 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 MBTPS1Q14703 1052 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 RSPO4Q2I0M5 234 aaPredicted RBP8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 TTC16Q8NEE8 873 aa8.46□□□□□ -1.06
SMCHD1-205ENST00000581383 ADGRE1Q14246 886 aa8.45□□□□□ -1.06
SMCHD1-205ENST00000581383 TTC39BQ5VTQ0 682 aaPredicted RBP8.45□□□□□ -1.06
SMCHD1-205ENST00000581383 DTWD1Q8N5C7 304 aa8.45□□□□□ -1.06
SMCHD1-205ENST00000581383 PLD4Q96BZ4 506 aa8.45□□□□□ -1.06
SMCHD1-205ENST00000581383 SAP130Q9H0E3 1048 aa8.45□□□□□ -1.06
SMCHD1-205ENST00000581383 SLAIN2Q9P270 581 aa8.45□□□□□ -1.06
SMCHD1-205ENST00000581383 DYRK3O43781 588 aa8.44□□□□□ -1.06
SMCHD1-205ENST00000581383 MMP20O60882 483 aa8.44□□□□□ -1.06
SMCHD1-205ENST00000581383 SCNN1AP37088 669 aa8.44□□□□□ -1.06
SMCHD1-205ENST00000581383 NLRP13Q86W25 1043 aa8.44□□□□□ -1.06
SMCHD1-205ENST00000581383 IL22RA1Q8N6P7 574 aa8.44□□□□□ -1.06
SMCHD1-205ENST00000581383 CXXC1Q9P0U4 656 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-205ENST00000581383 EGFRP00533 1210 aa8.43□□□□□ -1.06
SMCHD1-205ENST00000581383 FBXO11Q86XK2 927 aa8.43□□□□□ -1.06
SMCHD1-205ENST00000581383 ETFBKMTQ8IXQ9 262 aa8.43□□□□□ -1.06
SMCHD1-205ENST00000581383 CLP1Q92989 425 aaKnown RBP8.43□□□□□ -1.06
SMCHD1-205ENST00000581383 ZAP70P43403 619 aa8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 IREB2P48200 963 aaKnown RBP8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 NKAPLQ5M9Q1 402 aa8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 ABTB2Q8N961 1025 aa8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 GPR152Q8TDT2 470 aa8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 TTC9Q92623 222 aa8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 COL26A1Q96A83 441 aa8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 GOLGA2P5Q9HBQ8 144 aa8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 KCNMB2Q9Y691 235 aa8.42□□□□□ -1.06
SMCHD1-205ENST00000581383 ATP2B4P23634 1241 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 SSFA2P28290 1259 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 KCNA1Q09470 495 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 HYAL2Q12891 473 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 OCLNQ16625 522 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 PRSS36Q5K4E3 855 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 B4GALNT3Q6L9W6 998 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 PHLDB3Q6NSJ2 640 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 IGF2-ASQ6U949 168 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 DCAF11Q8TEB1 546 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 STIM2Q9P246 746 aa8.41□□□□□ -1.06
SMCHD1-205ENST00000581383 WFDC12Q8WWY7 111 aa8.4□□□□□ -1.06
SMCHD1-205ENST00000581383 GZF1Q9H116 711 aaPredicted RBP8.4□□□□□ -1.06
SMCHD1-205ENST00000581383 PATL2C9JE40 543 aaKnown RBP8.39□□□□□ -1.07
SMCHD1-205ENST00000581383 SMNDC1O75940 238 aaKnown RBP eCLIP8.39□□□□□ -1.077e-8■□□□□ 8.7
SMCHD1-205ENST00000581383 PCSK2P16519 638 aa8.39□□□□□ -1.07
SMCHD1-205ENST00000581383 SOX18P35713 384 aa8.39□□□□□ -1.07
SMCHD1-205ENST00000581383 AAMPQ13685 434 aa8.39□□□□□ -1.07
SMCHD1-205ENST00000581383 GRIK5Q16478 980 aa8.39□□□□□ -1.07
SMCHD1-205ENST00000581383 CAPN12Q6ZSI9 719 aa8.39□□□□□ -1.07
SMCHD1-205ENST00000581383 NBPF11Q86T75 865 aa8.39□□□□□ -1.07
SMCHD1-205ENST00000581383 CDC25BP30305 580 aa8.38□□□□□ -1.07
SMCHD1-205ENST00000581383 CEP135Q66GS9 1140 aa8.38□□□□□ -1.07
SMCHD1-205ENST00000581383 NCAPG2Q86XI2 1143 aa8.38□□□□□ -1.07
SMCHD1-205ENST00000581383 IVNS1ABPQ9Y6Y0 642 aa8.38□□□□□ -1.07
SMCHD1-205ENST00000581383 H2AFB1P0C5Y9 115 aa8.37□□□□□ -1.07
SMCHD1-205ENST00000581383 H2AFB2P0C5Z0 115 aa8.37□□□□□ -1.07
SMCHD1-205ENST00000581383 TRIP4Q15650 581 aaPredicted RBP8.37□□□□□ -1.07
SMCHD1-205ENST00000581383 FAM117BQ6P1L5 589 aa8.37□□□□□ -1.07
SMCHD1-205ENST00000581383 LACRTQ9GZZ8 138 aa8.37□□□□□ -1.07
SMCHD1-205ENST00000581383 MUC3BQ9H195 1237 aa8.37□□□□□ -1.07
SMCHD1-205ENST00000581383 AKTIPQ9H8T0 292 aa8.37□□□□□ -1.07
SMCHD1-205ENST00000581383 PPME1Q9Y570 386 aa8.37□□□□□ -1.07
SMCHD1-205ENST00000581383 ZNF438Q7Z4V0 828 aa8.36□□□□□ -1.07
SMCHD1-205ENST00000581383 MAP4K3Q8IVH8 894 aa8.36□□□□□ -1.07
SMCHD1-205ENST00000581383 CACTIN-AS1Q8N1I8 211 aa8.36□□□□□ -1.07
SMCHD1-205ENST00000581383 MRPL18Q9H0U6 180 aaKnown RBP8.36□□□□□ -1.07
SMCHD1-205ENST00000581383 ABI2Q9NYB9 513 aaPredicted RBP8.36□□□□□ -1.07
SMCHD1-205ENST00000581383 TRIM33Q9UPN9 1127 aa8.36□□□□□ -1.07
SMCHD1-205ENST00000581383 TNFRSF10BO14763 440 aa8.35□□□□□ -1.07
SMCHD1-205ENST00000581383 OR13H1Q8NG92 308 aa8.35□□□□□ -1.07
SMCHD1-205ENST00000581383 KRTAP4-7Q9BYR0 210 aa8.35□□□□□ -1.07
SMCHD1-205ENST00000581383 SRA1Q9HD15 236 aaKnown RBP8.35□□□□□ -1.07
SMCHD1-205ENST00000581383 ZFP64Q9NPA5 681 aa8.35□□□□□ -1.07
SMCHD1-205ENST00000581383 LINC01387J3KSC0 135 aa8.34□□□□□ -1.07
SMCHD1-205ENST00000581383 DEAF1O75398 565 aaPredicted RBP8.34□□□□□ -1.07
SMCHD1-205ENST00000581383 RPLP1P05386 114 aaKnown RBP8.34□□□□□ -1.07
SMCHD1-205ENST00000581383 GLB1P16278 677 aa8.34□□□□□ -1.07
SMCHD1-205ENST00000581383 NOS3P29474 1203 aa8.34□□□□□ -1.07
SMCHD1-205ENST00000581383 DNM1Q05193 864 aaKnown RBP8.34□□□□□ -1.07
SMCHD1-205ENST00000581383 C8orf34Q49A92 452 aa8.34□□□□□ -1.07
SMCHD1-205ENST00000581383 ALX3O95076 343 aa8.33□□□□□ -1.08
SMCHD1-205ENST00000581383 TXNDC11Q6PKC3 985 aa8.33□□□□□ -1.08
SMCHD1-205ENST00000581383 TXNDC2Q86VQ3 553 aa8.33□□□□□ -1.08
SMCHD1-205ENST00000581383 CCER1Q8TC90 406 aaPredicted RBP8.33□□□□□ -1.08
SMCHD1-205ENST00000581383 NUDT16Q96DE0 195 aaKnown RBP8.33□□□□□ -1.08
SMCHD1-205ENST00000581383 SEPT3Q9UH03 358 aa8.33□□□□□ -1.08
SMCHD1-205ENST00000581383 GNEQ9Y223 722 aaKnown RBP8.33□□□□□ -1.08
SMCHD1-205ENST00000581383 CDC27P30260 824 aa8.32□□□□□ -1.08
SMCHD1-205ENST00000581383 ATP11AP98196 1134 aa8.32□□□□□ -1.08
SMCHD1-205ENST00000581383 FOXD4L6Q3SYB3 417 aaPredicted RBP8.32□□□□□ -1.08
SMCHD1-205ENST00000581383 FAM26DQ5JW98 314 aa8.32□□□□□ -1.08
SMCHD1-205ENST00000581383 ARTNQ5T4W7 220 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms