RNA–Protein interactions for RNA: ENST00000576932.5

TOM1L1-223, Transcript of target of myb1 like 1 membrane trafficking protein, human

TSL 1 (best)

Gene TOM1L1, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1L1-223	ENST00000576932	MAP3K7	O43318	606 aa		12.42	□□□□□ -0.42
TOM1L1-223	ENST00000576932	DIAPH1	O60610	1272 aa	Known RBP	12.42	□□□□□ -0.42
TOM1L1-223	ENST00000576932	OSBP	P22059	807 aa		12.42	□□□□□ -0.42
TOM1L1-223	ENST00000576932	HOXA10	P31260	410 aa	Predicted RBP	12.42	□□□□□ -0.42
TOM1L1-223	ENST00000576932	ZNF454	Q8N9F8	522 aa		12.42	□□□□□ -0.42
TOM1L1-223	ENST00000576932	NYX	Q9GZU5	481 aa		12.42	□□□□□ -0.42
TOM1L1-223	ENST00000576932	SAGE1	Q9NXZ1	904 aa		12.42	□□□□□ -0.42
TOM1L1-223	ENST00000576932	USP16	Q9Y5T5	823 aa		12.42	□□□□□ -0.42
TOM1L1-223	ENST00000576932	BTBD11	A6QL63	1104 aa		12.41	□□□□□ -0.42
TOM1L1-223	ENST00000576932	CIAPIN1	Q6FI81	312 aa		12.41	□□□□□ -0.42
TOM1L1-223	ENST00000576932	NIM1K	Q8IY84	436 aa		12.41	□□□□□ -0.42
TOM1L1-223	ENST00000576932	ZDHHC16	Q969W1	377 aa		12.41	□□□□□ -0.42
TOM1L1-223	ENST00000576932	IBTK	Q9P2D0	1353 aa	Predicted RBP	12.41	□□□□□ -0.42
TOM1L1-223	ENST00000576932	SNRPA1	P09661	255 aa	Known RBP	12.4	□□□□□ -0.42
TOM1L1-223	ENST00000576932	GTF2E1	P29083	439 aa	Predicted RBP	12.4	□□□□□ -0.42
TOM1L1-223	ENST00000576932	FOSB	P53539	338 aa		12.4	□□□□□ -0.42
TOM1L1-223	ENST00000576932	PRKCSH	P14314	528 aa	Predicted RBP	12.39	□□□□□ -0.43
TOM1L1-223	ENST00000576932	CDC37L1	Q7L3B6	337 aa		12.39	□□□□□ -0.43
TOM1L1-223	ENST00000576932	KRI1	Q8N9T8	703 aa	Known RBP	12.39	□□□□□ -0.43
TOM1L1-223	ENST00000576932	CRAMP1	Q96RY5	1269 aa		12.39	□□□□□ -0.43
TOM1L1-223	ENST00000576932	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.38	□□□□□ -0.43
TOM1L1-223	ENST00000576932	RPGR	Q92834	1020 aa	Known RBP	12.38	□□□□□ -0.43
TOM1L1-223	ENST00000576932	GLIS2	Q9BZE0	524 aa	Predicted RBP	12.38	□□□□□ -0.43
TOM1L1-223	ENST00000576932	PCDHGA10	Q9Y5H3	936 aa		12.38	□□□□□ -0.43
TOM1L1-223	ENST00000576932	ABCC12	Q96J65	1359 aa		12.38	□□□□□ -0.43
TOM1L1-223	ENST00000576932	NPC1L1	Q9UHC9	1359 aa		12.38	□□□□□ -0.43
TOM1L1-223	ENST00000576932	NBPF26	B4DH59	902 aa		12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	ERVV-1	B6SEH8	477 aa		12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	PPIP5K2	O43314	1243 aa		12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	KCNQ3	O43525	872 aa		12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	PIP4K2A	P48426	406 aa	Predicted RBP	12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	SOX10	P56693	466 aa		12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	NBPF10	Q6P3W6	841 aa	Known RBP	12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	NBPF15	Q8N660	670 aa		12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	ZNRF3	Q9ULT6	936 aa		12.37	□□□□□ -0.43
TOM1L1-223	ENST00000576932	COL3A1	P02461	1466 aa	Predicted RBP	12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	FAM177B	A6PVY3	158 aa		12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	PPEF1	O14829	653 aa	Predicted RBP	12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	CXCL9	Q07325	125 aa		12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	HIC1	Q14526	733 aa		12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	HLF	Q16534	295 aa		12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	SUPT20H	Q8NEM7	779 aa		12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	GCC1	Q96CN9	775 aa		12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	RBM17	Q96I25	401 aa	Known RBP	12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	RTFDC1	Q9BY42	306 aa	Predicted RBP	12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	TMX4	Q9H1E5	349 aa	Predicted RBP	12.36	□□□□□ -0.43
TOM1L1-223	ENST00000576932	FAM155A	B1AL88	458 aa	Predicted RBP	12.35	□□□□□ -0.43
TOM1L1-223	ENST00000576932	GMPS	P49915	693 aa	Predicted RBP	12.35	□□□□□ -0.43
TOM1L1-223	ENST00000576932	HUNK	P57058	714 aa		12.35	□□□□□ -0.43
TOM1L1-223	ENST00000576932	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.35	□□□□□ -0.43	6e-12	■■■■□ 20.1
TOM1L1-223	ENST00000576932	CCDC102A	Q96A19	550 aa		12.35	□□□□□ -0.43
TOM1L1-223	ENST00000576932	ZNF408	Q9H9D4	720 aa		12.35	□□□□□ -0.43
TOM1L1-223	ENST00000576932	LHX6	Q9UPM6	363 aa		12.35	□□□□□ -0.43
TOM1L1-223	ENST00000576932	PRAMEF22	A3QJZ6	481 aa		12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	HSPA5	P11021	654 aa	Known RBP	12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	HIRA	P54198	1017 aa	Predicted RBP	12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	TNIP1	Q15025	636 aa		12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	AOC3	Q16853	763 aa		12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	RGMB	Q6NW40	437 aa		12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	CTU1	Q7Z7A3	348 aa	Known RBP	12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	NUTM1	Q86Y26	1132 aa		12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	ZIC5	Q96T25	663 aa		12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	ATP6V0A2	Q9Y487	856 aa		12.34	□□□□□ -0.43
TOM1L1-223	ENST00000576932	ZMYND10	O75800	440 aa		12.33	□□□□□ -0.44
TOM1L1-223	ENST00000576932	PKN2	Q16513	984 aa	Known RBP	12.33	□□□□□ -0.44
TOM1L1-223	ENST00000576932	RNF186	Q9NXI6	227 aa		12.33	□□□□□ -0.44
TOM1L1-223	ENST00000576932	MAP3K15	Q6ZN16	1313 aa		12.33	□□□□□ -0.44
TOM1L1-223	ENST00000576932		H7C1D1	291 aa		12.32	□□□□□ -0.44
TOM1L1-223	ENST00000576932	U2SURP	O15042	1029 aa	Known RBP	12.32	□□□□□ -0.44
TOM1L1-223	ENST00000576932	KIAA2012	Q0VF49	1180 aa		12.32	□□□□□ -0.44
TOM1L1-223	ENST00000576932	BCL2L13	Q9BXK5	485 aa		12.32	□□□□□ -0.44
TOM1L1-223	ENST00000576932	AKAP11	Q9UKA4	1901 aa		12.32	□□□□□ -0.44
TOM1L1-223	ENST00000576932	LAMB4	A4D0S4	1761 aa		12.32	□□□□□ -0.44
TOM1L1-223	ENST00000576932	NUP98	P52948	1817 aa		12.32	□□□□□ -0.44
TOM1L1-223	ENST00000576932	KIF23	Q02241	960 aa	Predicted RBP	12.31	□□□□□ -0.44
TOM1L1-223	ENST00000576932	C2orf69	Q8N8R5	385 aa		12.31	□□□□□ -0.44
TOM1L1-223	ENST00000576932	TRPM4	Q8TD43	1214 aa		12.31	□□□□□ -0.44
TOM1L1-223	ENST00000576932	DPF2	Q92785	391 aa		12.31	□□□□□ -0.44
TOM1L1-223	ENST00000576932	GBA2	Q9HCG7	927 aa	Predicted RBP	12.31	□□□□□ -0.44
TOM1L1-223	ENST00000576932	CNOT7	Q9UIV1	285 aa	Known RBP	12.31	□□□□□ -0.44
TOM1L1-223	ENST00000576932	UBN2	Q6ZU65	1347 aa		12.31	□□□□□ -0.44
TOM1L1-223	ENST00000576932	CLSPN	Q9HAW4	1339 aa		12.31	□□□□□ -0.44
TOM1L1-223	ENST00000576932	HTATSF1	O43719	755 aa	Known RBP	12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	TRPA1	O75762	1119 aa		12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	BBOX1	O75936	387 aa		12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	PTPRE	P23469	700 aa		12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	EMP3	P54852	163 aa		12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	KIF6	Q6ZMV9	814 aa		12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	USP48	Q86UV5	1035 aa		12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	RTF1	Q92541	710 aa	Known RBP	12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	NLRP3	Q96P20	1036 aa		12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	HPS5	Q9UPZ3	1129 aa		12.3	□□□□□ -0.44
TOM1L1-223	ENST00000576932	PER1	O15534	1290 aa	Predicted RBP	12.29	□□□□□ -0.44
TOM1L1-223	ENST00000576932	NTSR2	O95665	410 aa		12.29	□□□□□ -0.44
TOM1L1-223	ENST00000576932	SLC10A3	P09131	477 aa		12.29	□□□□□ -0.44
TOM1L1-223	ENST00000576932	ZNF157	P51786	506 aa	Predicted RBP	12.29	□□□□□ -0.44
TOM1L1-223	ENST00000576932	PARP10	Q53GL7	1025 aa		12.29	□□□□□ -0.44
TOM1L1-223	ENST00000576932	SLC10A5	Q5PT55	438 aa		12.29	□□□□□ -0.44
TOM1L1-223	ENST00000576932	SUSD4	Q5VX71	490 aa		12.29	□□□□□ -0.44
TOM1L1-223	ENST00000576932	DPP8	Q6V1X1	898 aa	Predicted RBP	12.29	□□□□□ -0.44

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