RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 RFX7Q2KHR2 1363 aa11.33□□□□□ -0.6
LINC00838-201ENST00000562956 GNPATO15228 680 aa11.33□□□□□ -0.6
LINC00838-201ENST00000562956 ATP2B3Q16720 1220 aa11.33□□□□□ -0.6
LINC00838-201ENST00000562956 SLFNL1Q499Z3 407 aa11.33□□□□□ -0.6
LINC00838-201ENST00000562956 GORABQ5T7V8 394 aa11.33□□□□□ -0.6
LINC00838-201ENST00000562956 SEC62Q99442 399 aaKnown RBP11.33□□□□□ -0.6
LINC00838-201ENST00000562956 BCL2L12Q9HB09 334 aa11.33□□□□□ -0.6
LINC00838-201ENST00000562956 CIZ1Q9ULV3 898 aaPredicted RBP11.33□□□□□ -0.6
LINC00838-201ENST00000562956 RBM8AQ9Y5S9 174 aaKnown RBP11.33□□□□□ -0.6
LINC00838-201ENST00000562956 RPS6KA4O75676 772 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 CCDC158Q5M9N0 1113 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 TTC39AQ5SRH9 613 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 NOL8Q76FK4 1167 aaKnown RBP11.32□□□□□ -0.6
LINC00838-201ENST00000562956 TMX3Q96JJ7 454 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 SCARF1Q14162 830 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 USPL1Q5W0Q7 1092 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 TBC1D9BQ66K14 1250 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 BICDL1Q6ZP65 573 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 CCDC129Q6ZRS4 1044 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.32□□□□□ -0.6
LINC00838-201ENST00000562956 KCNB2Q92953 911 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 SRP68Q9UHB9 627 aaKnown RBP11.32□□□□□ -0.6
LINC00838-201ENST00000562956 TAF5LO75529 589 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 PDE8BO95263 885 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 MCM2P49736 904 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 FKBP4Q02790 459 aaKnown RBP eCLIP11.32□□□□□ -0.6
LINC00838-201ENST00000562956 ADCK5Q3MIX3 580 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 ERFEQ4G0M1 354 aa11.32□□□□□ -0.6
LINC00838-201ENST00000562956 ZGPATQ8N5A5 531 aaKnown RBP11.32□□□□□ -0.6
LINC00838-201ENST00000562956 HELBQ8NG08 1087 aaPredicted RBP11.32□□□□□ -0.6
LINC00838-201ENST00000562956 CPA1P15085 419 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 KCNJ4P48050 445 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 CCDC152Q4G0S7 254 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 CREB3L3Q68CJ9 461 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 PKNOX2Q96KN3 472 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 NARFQ9UHQ1 456 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 BCORQ6W2J9 1755 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 RAB3GAP1Q15042 981 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 MCMDC2Q4G0Z9 681 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 PI16Q6UXB8 463 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 LRP5O75197 1615 aa11.31□□□□□ -0.6
LINC00838-201ENST00000562956 EP400Q96L91 3159 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 MYH3P11055 1940 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 SLC27A2O14975 620 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 CASTP20810 708 aaKnown RBP11.3□□□□□ -0.6
LINC00838-201ENST00000562956 C3orf67Q6ZVT6 689 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 TTC14Q96N46 770 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 BCL11BQ9C0K0 894 aaPredicted RBP11.3□□□□□ -0.6
LINC00838-201ENST00000562956 RTCBQ9Y3I0 505 aaKnown RBP11.3□□□□□ -0.6
LINC00838-201ENST00000562956 MROH5Q6ZUA9 1318 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 ARHGEF1Q92888 912 aaKnown RBP11.3□□□□□ -0.6
LINC00838-201ENST00000562956 TNPO1Q92973 898 aaKnown RBP11.3□□□□□ -0.6
LINC00838-201ENST00000562956 JAKMIP1Q96N16 626 aaKnown RBP11.3□□□□□ -0.6
LINC00838-201ENST00000562956 MPHOSPH8Q99549 860 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 LRRC4BQ9NT99 713 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 TAF6LQ9Y6J9 622 aa11.3□□□□□ -0.6
LINC00838-201ENST00000562956 DDX60Q8IY21 1712 aaKnown RBP11.3□□□□□ -0.6
LINC00838-201ENST00000562956 SNAP23O00161 211 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 HSP90B1P14625 803 aaKnown RBP11.29□□□□□ -0.6
LINC00838-201ENST00000562956 ZKSCAN1P17029 563 aaPredicted RBP11.29□□□□□ -0.6
LINC00838-201ENST00000562956 ZAP70P43403 619 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 RTL9Q8NET4 1388 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 RGL2O15211 777 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 ZPR1O75312 459 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 FGFR2P21802 821 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 MCAMP43121 646 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 COL9A3Q14050 684 aaPredicted RBP11.29□□□□□ -0.6
LINC00838-201ENST00000562956 PUM3Q15397 648 aaKnown RBP11.29□□□□□ -0.6
LINC00838-201ENST00000562956 RNF113AO15541 343 aaKnown RBP11.29□□□□□ -0.6
LINC00838-201ENST00000562956 MCM4P33991 863 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 AK2P54819 239 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 CUL4AQ13619 759 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 ZMYM1Q5SVZ6 1142 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 LARP6Q9BRS8 491 aaKnown RBP11.29□□□□□ -0.6
LINC00838-201ENST00000562956 ZSWIM6Q9HCJ5 1215 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 HELLSQ9NRZ9 838 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 ABCC12Q96J65 1359 aa11.29□□□□□ -0.6
LINC00838-201ENST00000562956 SCN7AQ01118 1682 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 PHF14O94880 888 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 SSFA2P28290 1259 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 PKP1Q13835 747 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 LPIN2Q92539 896 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 TM6SF1Q9BZW5 370 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 CWC22Q9HCG8 908 aaKnown RBP11.28□□□□□ -0.6
LINC00838-201ENST00000562956 COL4A1P02462 1669 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 IGHMBP2P38935 993 aaKnown RBP11.28□□□□□ -0.6
LINC00838-201ENST00000562956 PHKA1P46020 1223 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 CCDC102BQ68D86 513 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 FAM196AQ6ZSG2 479 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 RUFY3Q7L099 469 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 TICAM2Q86XR7 235 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 SETDB2Q96T68 719 aa11.28□□□□□ -0.6
LINC00838-201ENST00000562956 GTF2E1P29083 439 aaPredicted RBP11.27□□□□□ -0.6
LINC00838-201ENST00000562956 VPS53Q5VIR6 699 aa11.27□□□□□ -0.6
LINC00838-201ENST00000562956 RNF20Q5VTR2 975 aa11.27□□□□□ -0.6
LINC00838-201ENST00000562956 KRT27Q7Z3Y8 459 aa11.27□□□□□ -0.6
LINC00838-201ENST00000562956 ZNF512BQ96KM6 892 aaPredicted RBP11.27□□□□□ -0.6
LINC00838-201ENST00000562956 SBF2Q86WG5 1849 aa11.27□□□□□ -0.61
LINC00838-201ENST00000562956 MAST3O60307 1309 aa11.27□□□□□ -0.61
LINC00838-201ENST00000562956 LY75O60449 1722 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms