RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ZNF772Q68DY9 489 aaPredicted RBP12.82□□□□□ -0.36
USP3-206ENST00000558157 FBXO38Q6PIJ6 1188 aa12.82□□□□□ -0.36
USP3-206ENST00000558157 PAXIP1Q6ZW49 1069 aaPredicted RBP12.82□□□□□ -0.36
USP3-206ENST00000558157 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.82□□□□□ -0.36
USP3-206ENST00000558157 SBF2Q86WG5 1849 aa12.82□□□□□ -0.36
USP3-206ENST00000558157 ADCY9O60503 1353 aa12.82□□□□□ -0.36
USP3-206ENST00000558157 BTAF1O14981 1849 aa12.82□□□□□ -0.36
USP3-206ENST00000558157 SLU7O95391 586 aaKnown RBP12.81□□□□□ -0.36
USP3-206ENST00000558157 F13A1P00488 732 aa12.81□□□□□ -0.36
USP3-206ENST00000558157 DNAJC10Q8IXB1 793 aa12.81□□□□□ -0.36
USP3-206ENST00000558157 SLC4A9Q96Q91 983 aa12.81□□□□□ -0.36
USP3-206ENST00000558157 CICQ96RK0 1608 aaPredicted RBP12.81□□□□□ -0.36
USP3-206ENST00000558157 STX6O43752 255 aa12.81□□□□□ -0.36
USP3-206ENST00000558157 H2AFXP16104 143 aaPredicted RBP12.81□□□□□ -0.36
USP3-206ENST00000558157 ZNF75DP51815 510 aa12.81□□□□□ -0.36
USP3-206ENST00000558157 NYAP1Q6ZVC0 841 aa12.81□□□□□ -0.36
USP3-206ENST00000558157 LRP10Q7Z4F1 713 aa12.81□□□□□ -0.36
USP3-206ENST00000558157 RASSF4Q9H2L5 321 aa12.81□□□□□ -0.36
USP3-206ENST00000558157 ZNF215Q9UL58 517 aaPredicted RBP12.81□□□□□ -0.36
USP3-206ENST00000558157 PALLDQ8WX93 1383 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 TNNT3P45378 269 aaPredicted RBP12.8□□□□□ -0.36
USP3-206ENST00000558157 CCT4P50991 539 aaKnown RBP12.8□□□□□ -0.36
USP3-206ENST00000558157 TPM4P67936 248 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 AIMP1Q12904 312 aaKnown RBP12.8□□□□□ -0.36
USP3-206ENST00000558157 NAA30Q147X3 362 aaPredicted RBP12.8□□□□□ -0.36
USP3-206ENST00000558157 PTPN14Q15678 1187 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 MAP3K11Q16584 847 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 CEP85Q6P2H3 762 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 OTUD7AQ8TE49 926 aaPredicted RBP12.8□□□□□ -0.36
USP3-206ENST00000558157 ELP1O95163 1332 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 RAD50Q92878 1312 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 ARFGEF2Q9Y6D5 1785 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 PI4KAP2A4QPH2 592 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 NBPF26B4DH59 902 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 HMMRO75330 724 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 A1BGP04217 495 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 TUBB4AP04350 444 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 NBPF14Q5TI25 921 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 NBPF10Q6P3W6 841 aaKnown RBP12.8□□□□□ -0.36
USP3-206ENST00000558157 PTF1AQ7RTS3 328 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 DRC7Q8IY82 874 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 NBPF15Q8N660 670 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 PI4KAP1Q8N8J0 262 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 TDRD7Q8NHU6 1098 aaKnown RBP12.8□□□□□ -0.36
USP3-206ENST00000558157 XAGE3Q8WTP9 111 aa12.8□□□□□ -0.36
USP3-206ENST00000558157 PDE1AP54750 535 aa12.79□□□□□ -0.36
USP3-206ENST00000558157 DNAAF4Q8WXU2 420 aa12.79□□□□□ -0.36
USP3-206ENST00000558157 V9GYY5 206 aaPredicted RBP12.79□□□□□ -0.36
USP3-206ENST00000558157 TCHHQ07283 1943 aa12.79□□□□□ -0.36
USP3-206ENST00000558157 ATP8B1O43520 1251 aa12.79□□□□□ -0.36
USP3-206ENST00000558157 TYRO3Q06418 890 aa12.79□□□□□ -0.36
USP3-206ENST00000558157 LRMPQ12912 555 aa12.79□□□□□ -0.36
USP3-206ENST00000558157 GPS2Q13227 327 aa12.79□□□□□ -0.36
USP3-206ENST00000558157 FOXD4L6Q3SYB3 417 aaPredicted RBP12.79□□□□□ -0.36
USP3-206ENST00000558157 FOXD4L3Q6VB84 417 aaPredicted RBP12.79□□□□□ -0.36
USP3-206ENST00000558157 NUP188Q5SRE5 1749 aa12.79□□□□□ -0.36
USP3-206ENST00000558157 COPS6Q7L5N1 327 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 MEIS3Q99687 375 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 TEX13AQ9BXU3 409 aaPredicted RBP12.78□□□□□ -0.36
USP3-206ENST00000558157 CWC15Q9P013 229 aaKnown RBP12.78□□□□□ -0.36
USP3-206ENST00000558157 MAP3K2Q9Y2U5 619 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 MRVI1Q9Y6F6 885 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 FIBPO43427 364 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 SYT1P21579 422 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 ELF2Q15723 593 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 KSR2Q6VAB6 950 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 TRIM5Q9C035 493 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 NUP62CLQ9H1M0 184 aa12.78□□□□□ -0.36
USP3-206ENST00000558157 COL5A3P25940 1745 aaPredicted RBP12.77□□□□□ -0.36
USP3-206ENST00000558157 DDX58O95786 925 aaKnown RBP12.77□□□□□ -0.37
USP3-206ENST00000558157 MMP14P50281 582 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 ZNF446Q9NWS9 450 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 PALD1Q9ULE6 856 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 FHOD1Q9Y613 1164 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 ZNF831Q5JPB2 1677 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 RREB1Q92766 1687 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 STARD3NLO95772 234 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 SARM1Q6SZW1 724 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 RBM43Q6ZSC3 357 aaKnown RBP12.77□□□□□ -0.37
USP3-206ENST00000558157 CACTINQ8WUQ7 758 aaKnown RBP12.77□□□□□ -0.37
USP3-206ENST00000558157 SMARCC1Q92922 1105 aaPredicted RBP12.77□□□□□ -0.37
USP3-206ENST00000558157 ZFP91Q96JP5 570 aaPredicted RBP12.77□□□□□ -0.37
USP3-206ENST00000558157 L2HGDHQ9H9P8 463 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 CLIP2Q9UDT6 1046 aa12.77□□□□□ -0.37
USP3-206ENST00000558157 LOC102724428A0A0B4J2F2 783 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 CYP19A1P11511 503 aaPredicted RBP12.76□□□□□ -0.37
USP3-206ENST00000558157 SIK1P57059 783 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 BEND3Q5T5X7 828 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 KRT27Q7Z3Y8 459 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 LRRC8AQ8IWT6 810 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 CBX8Q9HC52 389 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 BRMS1Q9HCU9 246 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 ARGLU1Q9NWB6 273 aaPredicted RBP12.76□□□□□ -0.37
USP3-206ENST00000558157 CHMLP26374 656 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 HSPA4P34932 840 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 ATP6V1AP38606 617 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 NOP2P46087 812 aaKnown RBP12.76□□□□□ -0.37
USP3-206ENST00000558157 RIC3Q7Z5B4 369 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 ZNF592Q92610 1267 aa12.76□□□□□ -0.37
USP3-206ENST00000558157 MRFAP1L1Q96HT8 127 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms