RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TERF2Q15554 542 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 EZH2Q15910 746 aaKnown RBP6.27□□□□□ -1.41
USP28-213ENST00000544967 ATF7IPQ6VMQ6 1270 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 APBB1IPQ7Z5R6 666 aaPredicted RBP6.27□□□□□ -1.41
USP28-213ENST00000544967 FLAD1Q8NFF5 587 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 DDX54Q8TDD1 881 aaKnown RBP6.27□□□□□ -1.41
USP28-213ENST00000544967 FMNL2Q96PY5 1086 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 WDR70Q9NW82 654 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 RBM27Q9P2N5 1060 aaKnown RBP6.27□□□□□ -1.41
USP28-213ENST00000544967 KAT6BQ8WYB5 2073 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 EIF5P55010 431 aaKnown RBP6.27□□□□□ -1.41
USP28-213ENST00000544967 SLC15A2Q16348 729 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 DNTTIP2Q5QJE6 756 aaKnown RBP6.27□□□□□ -1.41
USP28-213ENST00000544967 ZNF771Q7L3S4 317 aaPredicted RBP6.27□□□□□ -1.41
USP28-213ENST00000544967 NME8Q8N427 588 aa6.27□□□□□ -1.41
USP28-213ENST00000544967 RPS6KA4O75676 772 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 APBA3O96018 575 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 IL6STP40189 918 aaPredicted RBP6.26□□□□□ -1.41
USP28-213ENST00000544967 KRT222Q8N1A0 295 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 MBIPQ9NS73 344 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 KCND1Q9NSA2 647 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 GEMIN8Q9NWZ8 242 aaKnown RBP6.26□□□□□ -1.41
USP28-213ENST00000544967 TPD52L2O43399 206 aaKnown RBP6.26□□□□□ -1.41
USP28-213ENST00000544967 CUL4AQ13619 759 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 TBC1D9Q6ZT07 1266 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 MCM10Q7L590 875 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 ZNF496Q96IT1 587 aaPredicted RBP6.26□□□□□ -1.41
USP28-213ENST00000544967 ZNF830Q96NB3 372 aaPredicted RBP6.26□□□□□ -1.41
USP28-213ENST00000544967 BTBD11A6QL63 1104 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 SNRPA1P09661 255 aaKnown RBP6.26□□□□□ -1.41
USP28-213ENST00000544967 IRX3P78415 501 aaPredicted RBP6.26□□□□□ -1.41
USP28-213ENST00000544967 MUM1L1Q5H9M0 696 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 ANKRD13AQ8IZ07 590 aa6.26□□□□□ -1.41
USP28-213ENST00000544967 USP42Q9H9J4 1324 aaKnown RBP6.25□□□□□ -1.41
USP28-213ENST00000544967 CD2BP2O95400 341 aaKnown RBP6.25□□□□□ -1.41
USP28-213ENST00000544967 AXDND1Q5T1B0 1012 aaPredicted RBP6.25□□□□□ -1.41
USP28-213ENST00000544967 FAM182BQ5T319 152 aa6.25□□□□□ -1.41
USP28-213ENST00000544967 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.25□□□□□ -1.41
USP28-213ENST00000544967 RTF1Q92541 710 aaKnown RBP6.25□□□□□ -1.41
USP28-213ENST00000544967 ERVV-1B6SEH8 477 aa6.25□□□□□ -1.41
USP28-213ENST00000544967 TUBB4AP04350 444 aa6.25□□□□□ -1.41
USP28-213ENST00000544967 TRIM27P14373 513 aa6.25□□□□□ -1.41
USP28-213ENST00000544967 EN1Q05925 392 aaPredicted RBP6.25□□□□□ -1.41
USP28-213ENST00000544967 CCDC183Q5T5S1 534 aa6.25□□□□□ -1.41
USP28-213ENST00000544967 ZNF662Q6ZS27 426 aa6.25□□□□□ -1.41
USP28-213ENST00000544967 AMIGO3Q86WK7 504 aa6.25□□□□□ -1.41
USP28-213ENST00000544967 CCNL1Q9UK58 526 aaPredicted RBP6.25□□□□□ -1.41
USP28-213ENST00000544967 SYCE3A1L190 88 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 REC8O95072 547 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 PTGER2P43116 358 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 NCBP1Q09161 790 aaKnown RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 CCDC146Q8IYE0 955 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 ZNF397Q8NF99 534 aaPredicted RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 CCDC87Q9NVE4 849 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 SBF1O95248 1867 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 RIOK3O14730 519 aaKnown RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 TEFQ10587 303 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 INTS3Q68E01 1043 aaKnown RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 HS6ST3Q8IZP7 471 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 KIF18AQ8NI77 898 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 ACSBG1Q96GR2 724 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 USP26Q9BXU7 913 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 ZDHHC9Q9Y397 364 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 TIAM2Q8IVF5 1701 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 KLRG2A4D1S0 409 aaPredicted RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 NBPF26B4DH59 902 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 ATP8B1O43520 1251 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 KCNQ3O43525 872 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 PRPF40AO75400 957 aaKnown RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 CRKLP46109 303 aaKnown RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 NBPF14Q5TI25 921 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 NBPF10Q6P3W6 841 aaKnown RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 CLEC4GQ6UXB4 293 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 NBPF15Q8N660 670 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 BRMS1Q9HCU9 246 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 STK24Q9Y6E0 443 aa6.24□□□□□ -1.41
USP28-213ENST00000544967 ZC3H4Q9UPT8 1303 aaKnown RBP6.24□□□□□ -1.41
USP28-213ENST00000544967 A0A087WZG4 1122 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 TM4SF1P30408 202 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 DEFB132Q7Z7B7 95 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 KIF1BPQ96EK5 621 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 LAMB1P07942 1786 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 TESPA1A2RU30 521 aaPredicted RBP6.23□□□□□ -1.41
USP28-213ENST00000544967 KIF2AO00139 706 aaPredicted RBP6.23□□□□□ -1.41
USP28-213ENST00000544967 NEMFO60524 1076 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 MYCNP04198 464 aaPredicted RBP6.23□□□□□ -1.41
USP28-213ENST00000544967 SF3B2Q13435 895 aaKnown RBP6.23□□□□□ -1.41
USP28-213ENST00000544967 CASC1Q6TDU7 716 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 NARFQ9UHQ1 456 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 CACNA1SQ13698 1873 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 CAMTA2O94983 1202 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 U2AF2P26368 475 aaKnown RBP eCLIP6.23□□□□□ -1.41
USP28-213ENST00000544967 CYP2C19P33261 490 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 TRIM28Q13263 835 aaKnown RBP6.23□□□□□ -1.41
USP28-213ENST00000544967 DCTN1Q14203 1278 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 FUCA2Q9BTY2 467 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 RPS6KL1Q9Y6S9 549 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 SPEF2Q9C093 1822 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 RTL9Q8NET4 1388 aa6.23□□□□□ -1.41
USP28-213ENST00000544967 VAMP4O75379 141 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms