RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MYH3P11055 1940 aa24.98■■□□□ 1.59
VPS28-209ENST00000528142 HSP90AA1P07900 732 aaKnown RBP24.98■■□□□ 1.59
VPS28-209ENST00000528142 ADORA1P30542 326 aa24.98■■□□□ 1.59
VPS28-209ENST00000528142 DDX46Q7L014 1031 aaKnown RBP24.98■■□□□ 1.59
VPS28-209ENST00000528142 AMIGO3Q86WK7 504 aa24.98■■□□□ 1.59
VPS28-209ENST00000528142 MAP4K1Q92918 833 aa24.98■■□□□ 1.59
VPS28-209ENST00000528142 CNNM1Q9NRU3 951 aa24.98■■□□□ 1.59
VPS28-209ENST00000528142 HSP90B1P14625 803 aaKnown RBP24.97■■□□□ 1.59
VPS28-209ENST00000528142 MCM2P49736 904 aa24.97■■□□□ 1.59
VPS28-209ENST00000528142 NECTIN1Q15223 517 aa24.97■■□□□ 1.59
VPS28-209ENST00000528142 BCL2L12Q9HB09 334 aa24.97■■□□□ 1.59
VPS28-209ENST00000528142 PAG1Q9NWQ8 432 aa24.97■■□□□ 1.59
VPS28-209ENST00000528142 LRP5O75197 1615 aa24.97■■□□□ 1.59
VPS28-209ENST00000528142 IFIT1P09914 478 aaKnown RBP24.96■■□□□ 1.59
VPS28-209ENST00000528142 FOXD4L1Q9NU39 408 aa24.96■■□□□ 1.59
VPS28-209ENST00000528142 ATP2B3Q16720 1220 aa24.96■■□□□ 1.59
VPS28-209ENST00000528142 CCDC158Q5M9N0 1113 aa24.96■■□□□ 1.59
VPS28-209ENST00000528142 NARFQ9UHQ1 456 aa24.96■■□□□ 1.59
VPS28-209ENST00000528142 RTL9Q8NET4 1388 aa24.95■■□□□ 1.59
VPS28-209ENST00000528142 GOLIM4O00461 696 aa24.95■■□□□ 1.58
VPS28-209ENST00000528142 ILDR1Q86SU0 546 aaPredicted RBP24.95■■□□□ 1.58
VPS28-209ENST00000528142 ZNF589Q86UQ0 364 aaPredicted RBP24.95■■□□□ 1.58
VPS28-209ENST00000528142 PROM2Q8N271 834 aa24.95■■□□□ 1.58
VPS28-209ENST00000528142 PDE8BO95263 885 aa24.94■■□□□ 1.58
VPS28-209ENST00000528142 UPF3BQ9BZI7 483 aaKnown RBP24.94■■□□□ 1.58
VPS28-209ENST00000528142 GNPATO15228 680 aa24.93■■□□□ 1.58
VPS28-209ENST00000528142 CCDC152Q4G0S7 254 aa24.93■■□□□ 1.58
VPS28-209ENST00000528142 RBM8AQ9Y5S9 174 aaKnown RBP24.93■■□□□ 1.58
VPS28-209ENST00000528142 ABCC12Q96J65 1359 aa24.93■■□□□ 1.58
VPS28-209ENST00000528142 CHGBP05060 677 aa24.93■■□□□ 1.58
VPS28-209ENST00000528142 GORABQ5T7V8 394 aa24.93■■□□□ 1.58
VPS28-209ENST00000528142 PRPF40BQ6NWY9 871 aaKnown RBP24.93■■□□□ 1.58
VPS28-209ENST00000528142 DDX60Q8IY21 1712 aaKnown RBP24.93■■□□□ 1.58
VPS28-209ENST00000528142 MROH5Q6ZUA9 1318 aa24.92■■□□□ 1.58
VPS28-209ENST00000528142 C4BP0C0L5 1744 aa24.92■■□□□ 1.58
VPS28-209ENST00000528142 TAF5LO75529 589 aa24.92■■□□□ 1.58
VPS28-209ENST00000528142 TTC39AQ5SRH9 613 aa24.92■■□□□ 1.58
VPS28-209ENST00000528142 USPL1Q5W0Q7 1092 aa24.92■■□□□ 1.58
VPS28-209ENST00000528142 SEC31BQ9NQW1 1179 aa24.92■■□□□ 1.58
VPS28-209ENST00000528142 SCN7AQ01118 1682 aa24.91■■□□□ 1.58
VPS28-209ENST00000528142 TBC1D9BQ66K14 1250 aa24.91■■□□□ 1.58
VPS28-209ENST00000528142 TMX3Q96JJ7 454 aa24.91■■□□□ 1.58
VPS28-209ENST00000528142 RTCBQ9Y3I0 505 aaKnown RBP24.91■■□□□ 1.58
VPS28-209ENST00000528142 TNS1Q9HBL0 1735 aaKnown RBP24.91■■□□□ 1.58
VPS28-209ENST00000528142 MCMDC2Q4G0Z9 681 aa24.91■■□□□ 1.58
VPS28-209ENST00000528142 ERFEQ4G0M1 354 aa24.9■■□□□ 1.58
VPS28-209ENST00000528142 CREB3L3Q68CJ9 461 aa24.9■■□□□ 1.58
VPS28-209ENST00000528142 ZNF512BQ96KM6 892 aaPredicted RBP24.9■■□□□ 1.58
VPS28-209ENST00000528142 TTC14Q96N46 770 aa24.9■■□□□ 1.58
VPS28-209ENST00000528142 SRP68Q9UHB9 627 aaKnown RBP24.9■■□□□ 1.58
VPS28-209ENST00000528142 LAMB2P55268 1798 aa24.9■■□□□ 1.58
VPS28-209ENST00000528142 SPEF2Q9C093 1822 aa24.89■■□□□ 1.58
VPS28-209ENST00000528142 FGFR2P21802 821 aa24.89■■□□□ 1.58
VPS28-209ENST00000528142 SCARF1Q14162 830 aa24.89■■□□□ 1.58
VPS28-209ENST00000528142 RAB3GAP1Q15042 981 aa24.89■■□□□ 1.58
VPS28-209ENST00000528142 SEC62Q99442 399 aaKnown RBP24.89■■□□□ 1.58
VPS28-209ENST00000528142 TM6SF1Q9BZW5 370 aa24.89■■□□□ 1.58
VPS28-209ENST00000528142 CUL4AQ13619 759 aa24.89■■□□□ 1.57
VPS28-209ENST00000528142 SLC10A5Q5PT55 438 aa24.89■■□□□ 1.57
VPS28-209ENST00000528142 ARHGEF1Q92888 912 aaKnown RBP24.89■■□□□ 1.57
VPS28-209ENST00000528142 HELLSQ9NRZ9 838 aa24.89■■□□□ 1.57
VPS28-209ENST00000528142 SLC27A2O14975 620 aa24.88■■□□□ 1.57
VPS28-209ENST00000528142 ZMYM1Q5SVZ6 1142 aa24.88■■□□□ 1.57
VPS28-209ENST00000528142 CWC22Q9HCG8 908 aaKnown RBP24.88■■□□□ 1.57
VPS28-209ENST00000528142 ZPR1O75312 459 aa24.87■■□□□ 1.57
VPS28-209ENST00000528142 FKBP4Q02790 459 aaKnown RBP eCLIP24.87■■□□□ 1.57
VPS28-209ENST00000528142 SF3B3Q15393 1217 aaKnown RBP24.87■■□□□ 1.57
VPS28-209ENST00000528142 PUM3Q15397 648 aaKnown RBP24.87■■□□□ 1.57
VPS28-209ENST00000528142 ADCK5Q3MIX3 580 aa24.87■■□□□ 1.57
VPS28-209ENST00000528142 BICDL1Q6ZP65 573 aa24.87■■□□□ 1.57
VPS28-209ENST00000528142 MPHOSPH8Q99549 860 aa24.87■■□□□ 1.57
VPS28-209ENST00000528142 RNF113AO15541 343 aaKnown RBP24.86■■□□□ 1.57
VPS28-209ENST00000528142 ZKSCAN1P17029 563 aaPredicted RBP24.86■■□□□ 1.57
VPS28-209ENST00000528142 SSFA2P28290 1259 aa24.86■■□□□ 1.57
VPS28-209ENST00000528142 KCNJ4P48050 445 aa24.86■■□□□ 1.57
VPS28-209ENST00000528142 TXNRD1Q16881 649 aa24.86■■□□□ 1.57
VPS28-209ENST00000528142 CCDC129Q6ZRS4 1044 aa24.86■■□□□ 1.57
VPS28-209ENST00000528142 LPIN2Q92539 896 aa24.86■■□□□ 1.57
VPS28-209ENST00000528142 ZSWIM6Q9HCJ5 1215 aa24.86■■□□□ 1.57
VPS28-209ENST00000528142 APBA3O96018 575 aa24.86■■□□□ 1.57
VPS28-209ENST00000528142 C3orf67Q6ZVT6 689 aa24.86■■□□□ 1.57
VPS28-209ENST00000528142 ZGPATQ8N5A5 531 aaKnown RBP24.86■■□□□ 1.57
VPS28-209ENST00000528142 HELBQ8NG08 1087 aaPredicted RBP24.86■■□□□ 1.57
VPS28-209ENST00000528142 IGHMBP2P38935 993 aaKnown RBP24.85■■□□□ 1.57
VPS28-209ENST00000528142 ZAP70P43403 619 aa24.85■■□□□ 1.57
VPS28-209ENST00000528142 TSGA10IPQ3SY00 556 aa24.85■■□□□ 1.57
VPS28-209ENST00000528142 SLFNL1Q499Z3 407 aa24.85■■□□□ 1.57
VPS28-209ENST00000528142 CASTP20810 708 aaKnown RBP24.84■■□□□ 1.57
VPS28-209ENST00000528142 MCAMP43121 646 aa24.84■■□□□ 1.57
VPS28-209ENST00000528142 JAKMIP1Q96N16 626 aaKnown RBP24.84■■□□□ 1.57
VPS28-209ENST00000528142 SETDB2Q96T68 719 aa24.84■■□□□ 1.57
VPS28-209ENST00000528142 PLSCR1O15162 318 aa24.84■■□□□ 1.57
VPS28-209ENST00000528142 SLC27A3Q5K4L6 730 aa24.84■■□□□ 1.57
VPS28-209ENST00000528142 RNF20Q5VTR2 975 aa24.84■■□□□ 1.57
VPS28-209ENST00000528142 TNPO1Q92973 898 aaKnown RBP24.84■■□□□ 1.57
VPS28-209ENST00000528142 NYXQ9GZU5 481 aa24.84■■□□□ 1.57
VPS28-209ENST00000528142 HMG20BQ9P0W2 317 aa24.84■■□□□ 1.57
VPS28-209ENST00000528142 RPAP1Q9BWH6 1393 aaPredicted RBP24.83■■□□□ 1.57
VPS28-209ENST00000528142 MCM4P33991 863 aa24.83■■□□□ 1.57
VPS28-209ENST00000528142 CCDC102BQ68D86 513 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms