RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 TRIOBPQ9H2D6 2365 aa23.19■■□□□ 1.3
PVT1-220ENST00000524165 CEP290O15078 2479 aa23.18■■□□□ 1.3
PVT1-220ENST00000524165 C6orf229H3BNL8 230 aa23.18■■□□□ 1.3
PVT1-220ENST00000524165 DOK7Q18PE1 504 aa23.18■■□□□ 1.3
PVT1-220ENST00000524165 MOB2Q70IA6 237 aa23.18■■□□□ 1.3
PVT1-220ENST00000524165 NECTIN2Q92692 538 aa23.18■■□□□ 1.3
PVT1-220ENST00000524165 SZT2Q5T011 3432 aa23.18■■□□□ 1.3
PVT1-220ENST00000524165 SH3TC1Q8TE82 1336 aa23.17■■□□□ 1.3
PVT1-220ENST00000524165 UBE2Q2LH0YL09 131 aa23.17■■□□□ 1.3
PVT1-220ENST00000524165 HSP90AB3PQ58FF7 597 aa23.17■■□□□ 1.3
PVT1-220ENST00000524165 LRP10Q7Z4F1 713 aa23.17■■□□□ 1.3
PVT1-220ENST00000524165 NLRP10Q86W26 655 aa23.17■■□□□ 1.3
PVT1-220ENST00000524165 COLQQ9Y215 455 aaPredicted RBP23.17■■□□□ 1.3
PVT1-220ENST00000524165 BRCA2P51587 3418 aa23.17■■□□□ 1.3
PVT1-220ENST00000524165 U2AF1L5P0DN76 240 aaPredicted RBP23.16■■□□□ 1.3
PVT1-220ENST00000524165 U2AF1Q01081 240 aaKnown RBP eCLIP23.16■■□□□ 1.3
PVT1-220ENST00000524165 AGBL3Q8NEM8 1001 aa23.16■■□□□ 1.3
PVT1-220ENST00000524165 R3HDMLQ9H3Y0 253 aa23.16■■□□□ 1.3
PVT1-220ENST00000524165 TRMT112Q9UI30 125 aaKnown RBP23.15■■□□□ 1.3
PVT1-220ENST00000524165 TRIM17Q9Y577 477 aa23.15■■□□□ 1.3
PVT1-220ENST00000524165 ALDH1A1P00352 501 aa23.14■■□□□ 1.29
PVT1-220ENST00000524165 GPSM2P81274 684 aa23.14■■□□□ 1.29
PVT1-220ENST00000524165 PDIA6Q15084 440 aa23.13■■□□□ 1.29
PVT1-220ENST00000524165 OTOP1Q7RTM1 612 aa23.13■■□□□ 1.29
PVT1-220ENST00000524165 CLSPNQ9HAW4 1339 aa23.12■■□□□ 1.29
PVT1-220ENST00000524165 DLL1O00548 723 aa23.12■■□□□ 1.29
PVT1-220ENST00000524165 RSBN1LQ6PCB5 846 aaPredicted RBP23.12■■□□□ 1.29
PVT1-220ENST00000524165 TBC1D16Q8TBP0 767 aa23.12■■□□□ 1.29
PVT1-220ENST00000524165 CELF1Q92879 486 aaKnown RBP23.12■■□□□ 1.29
PVT1-220ENST00000524165 THUMPD2Q9BTF0 503 aaKnown RBP23.12■■□□□ 1.29
PVT1-220ENST00000524165 ZC3H12CQ9C0D7 883 aaKnown RBP23.12■■□□□ 1.29
PVT1-220ENST00000524165 MYOZ2Q9NPC6 264 aa23.12■■□□□ 1.29
PVT1-220ENST00000524165 TTLL12Q14166 644 aaPredicted RBP23.11■■□□□ 1.29
PVT1-220ENST00000524165 EN2P19622 333 aaPredicted RBP23.1■■□□□ 1.29
PVT1-220ENST00000524165 MKRN3Q13064 507 aaKnown RBP23.1■■□□□ 1.29
PVT1-220ENST00000524165 TCIRG1Q13488 830 aa23.1■■□□□ 1.29
PVT1-220ENST00000524165 ARMC5Q96C12 935 aa23.1■■□□□ 1.29
PVT1-220ENST00000524165 LAMB1P07942 1786 aa23.09■■□□□ 1.29
PVT1-220ENST00000524165 USP17L8P0C7I0 530 aa23.09■■□□□ 1.29
PVT1-220ENST00000524165 SF3B3Q15393 1217 aaKnown RBP23.09■■□□□ 1.29
PVT1-220ENST00000524165 GMLQ99445 158 aa23.09■■□□□ 1.29
PVT1-220ENST00000524165 PTPN22Q9Y2R2 807 aa23.09■■□□□ 1.29
PVT1-220ENST00000524165 G3V3G9 751 aa23.08■■□□□ 1.29
PVT1-220ENST00000524165 NF2P35240 595 aa23.08■■□□□ 1.29
PVT1-220ENST00000524165 CNGB1Q14028 1251 aaPredicted RBP23.08■■□□□ 1.29
PVT1-220ENST00000524165 DCAF8Q5TAQ9 597 aa23.08■■□□□ 1.29
PVT1-220ENST00000524165 PODXL2Q9NZ53 605 aa23.08■■□□□ 1.29
PVT1-220ENST00000524165 COL4A1P02462 1669 aa23.07■■□□□ 1.28
PVT1-220ENST00000524165 INHBEP58166 350 aa23.07■■□□□ 1.28
PVT1-220ENST00000524165 PRAMEF18Q5VWM3 479 aa23.07■■□□□ 1.28
PVT1-220ENST00000524165 PROSER3Q2NL68 480 aa23.06■■□□□ 1.28
PVT1-220ENST00000524165 SPRYD7Q5W111 196 aa23.06■■□□□ 1.28
PVT1-220ENST00000524165 SCAF8Q9UPN6 1271 aaKnown RBP23.06■■□□□ 1.28
PVT1-220ENST00000524165 CUL9Q8IWT3 2517 aa23.05■■□□□ 1.28
PVT1-220ENST00000524165 PTPN12Q05209 780 aaKnown RBP23.05■■□□□ 1.28
PVT1-220ENST00000524165 COPS6Q7L5N1 327 aa23.05■■□□□ 1.28
PVT1-220ENST00000524165 OTUD5Q96G74 571 aa23.05■■□□□ 1.28
PVT1-220ENST00000524165 ERO1AQ96HE7 468 aa23.05■■□□□ 1.28
PVT1-220ENST00000524165 EIF2S2P20042 333 aaKnown RBP23.04■■□□□ 1.28
PVT1-220ENST00000524165 ARMC9Q7Z3E5 817 aa23.04■■□□□ 1.28
PVT1-220ENST00000524165 MANSC4A6NHS7 340 aaPredicted RBP23.03■■□□□ 1.28
PVT1-220ENST00000524165 ANXA1P04083 346 aa23.03■■□□□ 1.28
PVT1-220ENST00000524165 RPS8P62241 208 aaKnown RBP23.03■■□□□ 1.28
PVT1-220ENST00000524165 IFNL1Q8IU54 200 aa23.03■■□□□ 1.28
PVT1-220ENST00000524165 SLC17A8Q8NDX2 589 aa23.03■■□□□ 1.28
PVT1-220ENST00000524165 TMEM106CQ9BVX2 250 aa23.03■■□□□ 1.28
PVT1-220ENST00000524165 UFL1O94874 794 aa23.02■■□□□ 1.28
PVT1-220ENST00000524165 NEFMP07197 916 aa23.02■■□□□ 1.28
PVT1-220ENST00000524165 NBPF9Q3BBW0 867 aa23.02■■□□□ 1.28
PVT1-220ENST00000524165 LDLRAD1Q5T700 205 aa23.02■■□□□ 1.28
PVT1-220ENST00000524165 XAGE3Q8WTP9 111 aa23.02■■□□□ 1.28
PVT1-220ENST00000524165 A0A0C4DFX4 3053 aa23.01■■□□□ 1.27
PVT1-220ENST00000524165 AIMP1Q12904 312 aaKnown RBP23.01■■□□□ 1.27
PVT1-220ENST00000524165 GGA1Q9UJY5 639 aa23.01■■□□□ 1.27
PVT1-220ENST00000524165 USP17L3A6NCW0 530 aa23■■□□□ 1.27
PVT1-220ENST00000524165 USP17L4A6NCW7 530 aa23■■□□□ 1.27
PVT1-220ENST00000524165 H0YGN5 161 aa23■■□□□ 1.27
PVT1-220ENST00000524165 USP17L1Q7RTZ2 530 aa23■■□□□ 1.27
PVT1-220ENST00000524165 ANKIB1Q9P2G1 1089 aa23■■□□□ 1.27
PVT1-220ENST00000524165 RANBP2P49792 3224 aaKnown RBP22.99■■□□□ 1.27
PVT1-220ENST00000524165 CD99L2Q8TCZ2 262 aa22.99■■□□□ 1.27
PVT1-220ENST00000524165 FAM89AQ96GI7 184 aa22.99■■□□□ 1.27
PVT1-220ENST00000524165 ZNF333Q96JL9 665 aa22.99■■□□□ 1.27
PVT1-220ENST00000524165 EFCC1Q9HA90 598 aa22.99■■□□□ 1.27
PVT1-220ENST00000524165 ZBTB48P10074 688 aaPredicted RBP22.98■■□□□ 1.27
PVT1-220ENST00000524165 PODNQ7Z5L7 613 aa22.98■■□□□ 1.27
PVT1-220ENST00000524165 ZNF646O15015 1829 aaPredicted RBP22.97■■□□□ 1.27
PVT1-220ENST00000524165 IGF2BP3O00425 579 aaKnown RBP eCLIP22.97■■□□□ 1.27
PVT1-220ENST00000524165 WNT10BO00744 389 aa22.97■■□□□ 1.27
PVT1-220ENST00000524165 TSPYL4Q9UJ04 414 aa22.97■■□□□ 1.27
PVT1-220ENST00000524165 PRKG1Q13976 671 aa22.96■■□□□ 1.27
PVT1-220ENST00000524165 OGFOD1Q8N543 542 aa22.96■■□□□ 1.27
PVT1-220ENST00000524165 COL6A3P12111 3177 aa22.96■■□□□ 1.27
PVT1-220ENST00000524165 MMP14P50281 582 aa22.95■■□□□ 1.26
PVT1-220ENST00000524165 NFE2L2Q16236 605 aa22.95■■□□□ 1.26
PVT1-220ENST00000524165 NBPF11Q86T75 865 aa22.95■■□□□ 1.26
PVT1-220ENST00000524165 ZNF428Q96B54 188 aa22.95■■□□□ 1.26
PVT1-220ENST00000524165 SLC10A4Q96EP9 437 aa22.95■■□□□ 1.26
PVT1-220ENST00000524165 ISCA1Q9BUE6 129 aa22.95■■□□□ 1.26
PVT1-220ENST00000524165 ANGEL1Q9UNK9 670 aaKnown RBP22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms