RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SIK1P57059 783 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 PPP2R3AQ06190 1150 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 VAC14Q08AM6 782 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 NFIAQ12857 509 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 PDE3BQ13370 1112 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 NCOA4Q13772 614 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 GRIK4Q16099 956 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 RSPO4Q2I0M5 234 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 RNF43Q68DV7 783 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 GDF6Q6KF10 455 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 USP17L2Q6R6M4 530 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 USP17L1Q7RTZ2 530 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 NLRP13Q86W25 1043 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 FCHSD1Q86WN1 690 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 SIX5Q8N196 739 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 CMTR1Q8N1G2 835 aaKnown RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 IL22RA1Q8N6P7 574 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 C12orf50Q8NA57 414 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 KCT2Q8NC54 265 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 RGS22Q8NE09 1264 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 BHLHE22Q8NFJ8 381 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 CCER1Q8TC90 406 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 TRPM4Q8TD43 1214 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 NUDT8Q8WV74 236 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 SCG3Q8WXD2 468 aaKnown RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 COL26A1Q96A83 441 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 PLD4Q96BZ4 506 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 CCDC97Q96F63 343 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 IFT43Q96FT9 208 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 NGLY1Q96IV0 654 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 GJD4Q96KN9 370 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 SUSD3Q96L08 255 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 TRIM34Q9BYJ4 488 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 SMG9Q9H0W8 520 aaKnown RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 C1orf115Q9H7X2 142 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 PIDD1Q9HB75 910 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 GPBP1L1Q9HC44 474 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 GDPD2Q9HCC8 539 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 PICK1Q9NRD5 415 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 TPSG1Q9NRR2 321 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 ZNF358Q9NW07 568 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 BSDC1Q9NW68 430 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 CUEDC1Q9NWM3 386 aaPredicted RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 TLR7Q9NYK1 1049 aaKnown RBP0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 PIM2Q9P1W9 311 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 GTF2IRD1Q9UHL9 959 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 SERPINA10Q9UK55 444 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 CHIC2Q9UKJ5 165 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 TBC1D2BQ9UPU7 963 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 HCN4Q9Y3Q4 1203 aa0.91□□□□□ -2.26
RNU4-54P-201ENST00000516428 FAM95CA0A1B0GW59 222 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM229AB2RXF0 380 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 E9PSI1 815 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 UBAP1LF5GYI3 381 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 H3BRJ5 948 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 NFIBO00712 420 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CYP26A1O43174 497 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 MICAL2O94851 1124 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM13AO94988 1023 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 ALBP02768 609 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 BMP3P12645 472 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 NID1P14543 1247 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TAL1P17542 331 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CES1P23141 567 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 COL8A1P27658 744 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 SSTR4P31391 388 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 AFMP43652 599 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 SCNN1DP51172 638 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 AFF1P51825 1210 aaKnown RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TYRO3Q06418 890 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM62Q0P6H9 643 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 C19orf57Q0VDD7 668 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 NFKBIBQ15653 356 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 SKIDA1Q1XH10 827 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CRTC2Q53ET0 693 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 NKAPLQ5M9Q1 402 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 EXOSC6Q5RKV6 272 aaKnown RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 HDGFL1Q5TGJ6 251 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMCO4Q5TGY1 634 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 ANGEL2Q5VTE6 544 aaKnown RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CEP135Q66GS9 1140 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 C16orf46Q6P387 395 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 BEND4Q6ZU67 534 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 ACAD11Q709F0 780 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CDC37L1Q7L3B6 337 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZNF438Q7Z4V0 828 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 ANKLE2Q86XL3 938 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM151BQ8IW70 566 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 DZIP1LQ8IYY4 767 aaKnown RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 RGL4Q8IZJ4 473 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TNS4Q8IZW8 715 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 PHTF2Q8N3S3 785 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CCDC82Q8N4S0 544 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 KDF1Q8NAX2 398 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 SERBP1Q8NC51 408 aaKnown RBP eCLIP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 MTMR14Q8NCE2 650 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 EPS8L1Q8TE68 723 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM40Q8WWA1 233 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 ASB11Q8WXH4 323 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TRIM11Q96F44 468 aa0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms