RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 GHRHP01286 108 aa10.56□□□□□ -0.72
NUP54-209ENST00000510569 C1orf115Q9H7X2 142 aa10.56□□□□□ -0.72
NUP54-209ENST00000510569 FNDC3AQ9Y2H6 1198 aaKnown RBP10.56□□□□□ -0.72
NUP54-209ENST00000510569 TMEM88BA6NKF7 163 aa10.55□□□□□ -0.72
NUP54-209ENST00000510569 DEAF1O75398 565 aaPredicted RBP10.55□□□□□ -0.72
NUP54-209ENST00000510569 GPR152Q8TDT2 470 aa10.55□□□□□ -0.72
NUP54-209ENST00000510569 HELQQ8TDG4 1101 aa10.54□□□□□ -0.72
NUP54-209ENST00000510569 RBSNQ9H1K0 784 aa10.54□□□□□ -0.72
NUP54-209ENST00000510569 SSBP4Q9BWG4 385 aaPredicted RBP10.53□□□□□ -0.72
NUP54-209ENST00000510569 USP21Q9UK80 565 aa10.53□□□□□ -0.72
NUP54-209ENST00000510569 DLL1O00548 723 aa10.52□□□□□ -0.73
NUP54-209ENST00000510569 COL13A1Q5TAT6 717 aaPredicted RBP10.52□□□□□ -0.73
NUP54-209ENST00000510569 SRA1Q9HD15 236 aaKnown RBP10.52□□□□□ -0.73
NUP54-209ENST00000510569 KIF4AO95239 1232 aa10.51□□□□□ -0.73
NUP54-209ENST00000510569 H2AFB1P0C5Y9 115 aa10.51□□□□□ -0.73
NUP54-209ENST00000510569 H2AFB2P0C5Z0 115 aa10.51□□□□□ -0.73
NUP54-209ENST00000510569 PDE12Q6L8Q7 609 aaKnown RBP10.51□□□□□ -0.73
NUP54-209ENST00000510569 IGF2-ASQ6U949 168 aa10.51□□□□□ -0.73
NUP54-209ENST00000510569 CACTIN-AS1Q8N1I8 211 aa10.51□□□□□ -0.73
NUP54-209ENST00000510569 ABI2Q9NYB9 513 aaPredicted RBP10.51□□□□□ -0.73
NUP54-209ENST00000510569 SSFA2P28290 1259 aa10.5□□□□□ -0.73
NUP54-209ENST00000510569 HYAL2Q12891 473 aa10.5□□□□□ -0.73
NUP54-209ENST00000510569 XP32Q5T750 250 aa10.5□□□□□ -0.73
NUP54-209ENST00000510569 GDF6Q6KF10 455 aaPredicted RBP10.5□□□□□ -0.73
NUP54-209ENST00000510569 TRIM33Q9UPN9 1127 aa10.5□□□□□ -0.73
NUP54-209ENST00000510569 TTC39BQ5VTQ0 682 aaPredicted RBP10.49□□□□□ -0.73
NUP54-209ENST00000510569 ATCAYQ86WG3 371 aa10.49□□□□□ -0.73
NUP54-209ENST00000510569 MAP4K3Q8IVH8 894 aa10.49□□□□□ -0.73
NUP54-209ENST00000510569 IL22RA1Q8N6P7 574 aa10.49□□□□□ -0.73
NUP54-209ENST00000510569 NUDT16Q96DE0 195 aaKnown RBP10.49□□□□□ -0.73
NUP54-209ENST00000510569 RPLP1P05386 114 aaKnown RBP10.48□□□□□ -0.73
NUP54-209ENST00000510569 SCNN1AP37088 669 aa10.48□□□□□ -0.73
NUP54-209ENST00000510569 Q8N3U1 123 aa10.48□□□□□ -0.73
NUP54-209ENST00000510569 WFDC12Q8WWY7 111 aa10.48□□□□□ -0.73
NUP54-209ENST00000510569 NOS3P29474 1203 aa10.47□□□□□ -0.73
NUP54-209ENST00000510569 ATP11AP98196 1134 aa10.47□□□□□ -0.73
NUP54-209ENST00000510569 SETDB1Q15047 1291 aa10.47□□□□□ -0.73
NUP54-209ENST00000510569 DCAF11Q8TEB1 546 aa10.47□□□□□ -0.73
NUP54-209ENST00000510569 MUC3BQ9H195 1237 aa10.47□□□□□ -0.73
NUP54-209ENST00000510569 ELP3Q9H9T3 547 aa10.47□□□□□ -0.73
NUP54-209ENST00000510569 XKR5Q6UX68 686 aa10.46□□□□□ -0.73
NUP54-209ENST00000510569 GTF3C2Q8WUA4 911 aaPredicted RBP10.46□□□□□ -0.73
NUP54-209ENST00000510569 TMEM63CQ9P1W3 806 aa10.46□□□□□ -0.73
NUP54-209ENST00000510569 CYP2E1P05181 493 aaPredicted RBP10.45□□□□□ -0.74
NUP54-209ENST00000510569 NOM1Q5C9Z4 860 aaKnown RBP10.45□□□□□ -0.74
NUP54-209ENST00000510569 EDEM1Q92611 657 aa10.45□□□□□ -0.74
NUP54-209ENST00000510569 TP53INP1Q96A56 240 aa10.45□□□□□ -0.74
NUP54-209ENST00000510569 SPACA7Q96KW9 195 aa10.45□□□□□ -0.74
NUP54-209ENST00000510569 SMNDC1O75940 238 aaKnown RBP eCLIP10.44□□□□□ -0.74
NUP54-209ENST00000510569 PDGFAP04085 211 aa10.44□□□□□ -0.74
NUP54-209ENST00000510569 MPSTP25325 297 aa10.44□□□□□ -0.74
NUP54-209ENST00000510569 EIF1AXP47813 144 aaKnown RBP10.44□□□□□ -0.74
NUP54-209ENST00000510569 IREB2P48200 963 aaKnown RBP10.44□□□□□ -0.74
NUP54-209ENST00000510569 PRSS36Q5K4E3 855 aa10.44□□□□□ -0.74
NUP54-209ENST00000510569 ZMYM1Q5SVZ6 1142 aa10.44□□□□□ -0.74
NUP54-209ENST00000510569 PHLDB3Q6NSJ2 640 aa10.44□□□□□ -0.74
NUP54-209ENST00000510569 ZNF438Q7Z4V0 828 aa10.44□□□□□ -0.74
NUP54-209ENST00000510569 CEP120Q8N960 986 aa10.44□□□□□ -0.74
NUP54-209ENST00000510569 MRPL18Q9H0U6 180 aaKnown RBP10.44□□□□□ -0.74
NUP54-209ENST00000510569 NPR3P17342 541 aa10.43□□□□□ -0.74
NUP54-209ENST00000510569 MZF1P28698 734 aaPredicted RBP10.43□□□□□ -0.74
NUP54-209ENST00000510569 FOXD4L6Q3SYB3 417 aaPredicted RBP10.43□□□□□ -0.74
NUP54-209ENST00000510569 FOXD4L3Q6VB84 417 aaPredicted RBP10.43□□□□□ -0.74
NUP54-209ENST00000510569 C14orf37Q86TY3 774 aa10.43□□□□□ -0.74
NUP54-209ENST00000510569 TMEM130Q8N3G9 435 aa10.43□□□□□ -0.74
NUP54-209ENST00000510569 MEGF10Q96KG7 1140 aa10.43□□□□□ -0.74
NUP54-209ENST00000510569 RASSF4Q9H2L5 321 aa10.43□□□□□ -0.74
NUP54-209ENST00000510569 PPME1Q9Y570 386 aa10.43□□□□□ -0.74
NUP54-209ENST00000510569 PCSK2P16519 638 aa10.42□□□□□ -0.74
NUP54-209ENST00000510569 DNM1Q05193 864 aaKnown RBP10.42□□□□□ -0.74
NUP54-209ENST00000510569 CEP135Q66GS9 1140 aa10.42□□□□□ -0.74
NUP54-209ENST00000510569 PBX4Q9BYU1 374 aa10.42□□□□□ -0.74
NUP54-209ENST00000510569 AKTIPQ9H8T0 292 aa10.42□□□□□ -0.74
NUP54-209ENST00000510569 CNTN3Q9P232 1028 aa10.42□□□□□ -0.74
NUP54-209ENST00000510569 F8W735 103 aaPredicted RBP10.41□□□□□ -0.74
NUP54-209ENST00000510569 ALKBH2Q6NS38 261 aa10.41□□□□□ -0.74
NUP54-209ENST00000510569 ADAMTSL4Q6UY14 1074 aa10.41□□□□□ -0.74
NUP54-209ENST00000510569 Q6ZS46 218 aa10.41□□□□□ -0.74
NUP54-209ENST00000510569 GGNBP2Q9H3C7 697 aa10.41□□□□□ -0.74
NUP54-209ENST00000510569 TM4SF5O14894 197 aa10.4□□□□□ -0.74
NUP54-209ENST00000510569 CDC27P30260 824 aa10.4□□□□□ -0.74
NUP54-209ENST00000510569 MTMR3Q13615 1198 aa10.4□□□□□ -0.74
NUP54-209ENST00000510569 NCAPG2Q86XI2 1143 aa10.4□□□□□ -0.74
NUP54-209ENST00000510569 DZIP1LQ8IYY4 767 aaKnown RBP10.4□□□□□ -0.74
NUP54-209ENST00000510569 SALL4Q9UJQ4 1053 aa10.4□□□□□ -0.74
NUP54-209ENST00000510569 GALNT11Q8NCW6 608 aa10.39□□□□□ -0.75
NUP54-209ENST00000510569 LACRTQ9GZZ8 138 aa10.39□□□□□ -0.75
NUP54-209ENST00000510569 KANSL3Q9P2N6 904 aa10.39□□□□□ -0.75
NUP54-209ENST00000510569 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.38□□□□□ -0.75
NUP54-209ENST00000510569 C1orf127Q8N9H9 656 aa10.38□□□□□ -0.75
NUP54-209ENST00000510569 ADAM19Q9H013 955 aa10.38□□□□□ -0.75
NUP54-209ENST00000510569 CHRDQ9H2X0 955 aa10.38□□□□□ -0.75
NUP54-209ENST00000510569 MTMR7Q9Y216 660 aa10.38□□□□□ -0.75
NUP54-209ENST00000510569 USTQ9Y2C2 406 aa10.38□□□□□ -0.75
NUP54-209ENST00000510569 LINC01387J3KSC0 135 aa10.37□□□□□ -0.75
NUP54-209ENST00000510569 PTPRAP18433 802 aa10.37□□□□□ -0.75
NUP54-209ENST00000510569 POLIQ9UNA4 740 aa10.37□□□□□ -0.75
NUP54-209ENST00000510569 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.37□□□□□ -0.75
NUP54-209ENST00000510569 CARNS1A5YM72 827 aa10.36□□□□□ -0.75
NUP54-209ENST00000510569 A6NHS1 94 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms