RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-208ENST00000497539 DDX60Q8IY21 1712 aaKnown RBP13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 EIF5P55010 431 aaKnown RBP13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 ZSCAN23Q3MJ62 389 aa13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 SMARCC1Q92922 1105 aaPredicted RBP13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 INTS4Q96HW7 963 aaKnown RBP13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 TM6SF1Q9BZW5 370 aa13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 ZBTB1Q9Y2K1 713 aa13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 MTERF4Q7Z6M4 381 aaKnown RBP13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 ZNF34Q8IZ26 560 aa13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 FNBP4Q8N3X1 1017 aaPredicted RBP13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 LMBRD1Q9NUN5 540 aa13.84□□□□□ -0.19
SNRNP200-208ENST00000497539 CCDC171Q6TFL3 1326 aa13.83□□□□□ -0.2
SNRNP200-208ENST00000497539 INTS5Q6P9B9 1019 aaKnown RBP13.83□□□□□ -0.2
SNRNP200-208ENST00000497539 SNX14Q9Y5W7 946 aa13.83□□□□□ -0.2
SNRNP200-208ENST00000497539 RIC1Q4ADV7 1423 aa13.83□□□□□ -0.2
SNRNP200-208ENST00000497539 PSEN1P49768 467 aa13.83□□□□□ -0.2
SNRNP200-208ENST00000497539 NUCB2P80303 420 aa13.83□□□□□ -0.2
SNRNP200-208ENST00000497539 CWC27Q6UX04 472 aaKnown RBP13.83□□□□□ -0.2
SNRNP200-208ENST00000497539 R3HCC1Q9Y3T6 440 aaKnown RBP13.83□□□□□ -0.2
SNRNP200-208ENST00000497539 PTMAP06454 111 aaKnown RBP13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 ZSCAN20P17040 1043 aaPredicted RBP13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 SLC20A2Q08357 652 aa13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 TTC14Q96N46 770 aa13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 CCDC87Q9NVE4 849 aa13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 MYH14Q7Z406 1995 aaKnown RBP13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 NEK4P51957 841 aa13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 FAM193AP78312 1265 aa13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 NMIQ13287 307 aaPredicted RBP13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 MAP4K1Q92918 833 aa13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 ZNF622Q969S3 477 aaKnown RBP eCLIP13.82□□□□□ -0.21e-15■□□□□ 8.3
SNRNP200-208ENST00000497539 GTPBP4Q9BZE4 634 aaKnown RBP13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 PRDM10Q9NQV6 1147 aa13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 CCDC9Q9Y3X0 531 aaKnown RBP13.82□□□□□ -0.2
SNRNP200-208ENST00000497539 NECTIN1Q15223 517 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 HLFQ16534 295 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 ARID3AQ99856 593 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 DBNDD2Q9BQY9 259 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 RTL9Q8NET4 1388 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 RPAP1Q9BWH6 1393 aaPredicted RBP13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 TSGA10IPQ3SY00 556 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 TPRNQ4KMQ1 711 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 NSFL1CQ9UNZ2 370 aaKnown RBP13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 LY75O60449 1722 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 SH3TC1Q8TE82 1336 aa13.81□□□□□ -0.2
SNRNP200-208ENST00000497539 OFD1O75665 1012 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 AXDND1Q5T1B0 1012 aaPredicted RBP13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 GPT2Q8TD30 523 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 TMX3Q96JJ7 454 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 BOLA2Q9H3K6 86 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 COL24A1Q17RW2 1714 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 LOC102724428A0A0B4J2F2 783 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 SIK1P57059 783 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 USPL1Q5W0Q7 1092 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 DZIP3Q86Y13 1208 aaKnown RBP13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 FSD1Q9BTV5 496 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 ALDH8A1Q9H2A2 487 aaPredicted RBP13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 AKAP2Q9Y2D5 859 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 BTAF1O14981 1849 aa13.8□□□□□ -0.2
SNRNP200-208ENST00000497539 LETM1O95202 739 aaPredicted RBP13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 CTSWP56202 376 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 CCDC57Q2TAC2 916 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 FAM13BQ9NYF5 915 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 ZDHHC9Q9Y397 364 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 NUTM2BA6NNL0 878 aaPredicted RBP13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 NUTM2EB1AL46 878 aaPredicted RBP13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 ZNF445P59923 1031 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 PTH1RQ03431 593 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 NUTM2AQ8IVF1 878 aaPredicted RBP13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 KBTBD3Q8NAB2 608 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 RNF214Q8ND24 703 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 ZNF512BQ96KM6 892 aaPredicted RBP13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 ZSWIM6Q9HCJ5 1215 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 HMG20BQ9P0W2 317 aa13.79□□□□□ -0.2
SNRNP200-208ENST00000497539 A0A0D9SFI3 127 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 UBAP1LF5GYI3 381 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 CRKLP46109 303 aaKnown RBP13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 PIP4K2BP78356 416 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 FOXD4L6Q3SYB3 417 aaPredicted RBP13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 LRRC24Q50LG9 513 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 FOXD4L3Q6VB84 417 aaPredicted RBP13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 TTLL11Q8NHH1 800 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 FAM227BQ96M60 508 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 UBN2Q6ZU65 1347 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 CASZ1Q86V15 1759 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 SYCE3A1L190 88 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 PDE8AO60658 829 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 ITPK1Q13572 414 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 PARP10Q53GL7 1025 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 RASEFQ8IZ41 740 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 SYTL4Q96C24 671 aaPredicted RBP13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 CHMP3Q9Y3E7 222 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 CNTNAP4Q9C0A0 1308 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 MYH7P12883 1935 aa13.78□□□□□ -0.2
SNRNP200-208ENST00000497539 CAMTA2O94983 1202 aa13.77□□□□□ -0.2
SNRNP200-208ENST00000497539 IFIT5Q13325 482 aaKnown RBP13.77□□□□□ -0.2
SNRNP200-208ENST00000497539 VPS53Q5VIR6 699 aa13.77□□□□□ -0.2
SNRNP200-208ENST00000497539 NOL8Q76FK4 1167 aaKnown RBP13.77□□□□□ -0.2
SNRNP200-208ENST00000497539 FAM89AQ96GI7 184 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms