RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 TREML1Q86YW5 311 aa8.47□□□□□ -1.05
SMC4-224ENST00000494612 KRTAP4-7Q9BYR0 210 aa8.47□□□□□ -1.05
SMC4-224ENST00000494612 SMG9Q9H0W8 520 aaKnown RBP8.47□□□□□ -1.05
SMC4-224ENST00000494612 KCNMB2Q9Y691 235 aa8.47□□□□□ -1.05
SMC4-224ENST00000494612 DLL1O00548 723 aa8.46□□□□□ -1.06
SMC4-224ENST00000494612 XYLBO75191 536 aa8.46□□□□□ -1.06
SMC4-224ENST00000494612 GP2P55259 537 aaKnown RBP8.46□□□□□ -1.06
SMC4-224ENST00000494612 FKBP5Q13451 457 aaPredicted RBP8.46□□□□□ -1.06
SMC4-224ENST00000494612 FZD5Q13467 585 aa8.46□□□□□ -1.06
SMC4-224ENST00000494612 CDCA8Q53HL2 280 aa8.46□□□□□ -1.06
SMC4-224ENST00000494612 DZIP1LQ8IYY4 767 aaKnown RBP8.46□□□□□ -1.06
SMC4-224ENST00000494612 LOC102724428A0A0B4J2F2 783 aa8.45□□□□□ -1.06
SMC4-224ENST00000494612 GSC2O15499 205 aa8.45□□□□□ -1.06
SMC4-224ENST00000494612 HOXD8P13378 290 aaPredicted RBP8.45□□□□□ -1.06
SMC4-224ENST00000494612 ARID4AP29374 1257 aaPredicted RBP8.45□□□□□ -1.06
SMC4-224ENST00000494612 SIK1P57059 783 aa8.45□□□□□ -1.06
SMC4-224ENST00000494612 RGL4Q8IZJ4 473 aa8.45□□□□□ -1.06
SMC4-224ENST00000494612 CMTR1Q8N1G2 835 aaKnown RBP8.45□□□□□ -1.06
SMC4-224ENST00000494612 NOVA2Q9UNW9 492 aaKnown RBP8.45□□□□□ -1.06
SMC4-224ENST00000494612 OAS3Q9Y6K5 1087 aaKnown RBP8.45□□□□□ -1.06
SMC4-224ENST00000494612 J3QW42 95 aa8.44□□□□□ -1.06
SMC4-224ENST00000494612 MMP20O60882 483 aa8.44□□□□□ -1.06
SMC4-224ENST00000494612 RFX1P22670 979 aa8.44□□□□□ -1.06
SMC4-224ENST00000494612 FAM69CQ0P6D2 419 aa8.44□□□□□ -1.06
SMC4-224ENST00000494612 OCLNQ16625 522 aa8.44□□□□□ -1.06
SMC4-224ENST00000494612 SERPINA10Q9UK55 444 aa8.44□□□□□ -1.06
SMC4-224ENST00000494612 SOX18P35713 384 aa8.43□□□□□ -1.06
SMC4-224ENST00000494612 SWI5Q1ZZU3 235 aa8.43□□□□□ -1.06
SMC4-224ENST00000494612 HOMEZQ8IX15 550 aa8.43□□□□□ -1.06
SMC4-224ENST00000494612 ETFBKMTQ8IXQ9 262 aa8.43□□□□□ -1.06
SMC4-224ENST00000494612 PLD4Q96BZ4 506 aa8.43□□□□□ -1.06
SMC4-224ENST00000494612 PRIMPOLQ96LW4 560 aa8.43□□□□□ -1.06
SMC4-224ENST00000494612 MRPL18Q9H0U6 180 aaKnown RBP8.43□□□□□ -1.06
SMC4-224ENST00000494612 ACIN1Q9UKV3 1341 aaKnown RBP8.43□□□□□ -1.06
SMC4-224ENST00000494612 EIF2AK2P19525 551 aaKnown RBP8.42□□□□□ -1.06
SMC4-224ENST00000494612 FAM26DQ5JW98 314 aa8.42□□□□□ -1.06
SMC4-224ENST00000494612 TMEM130Q8N3G9 435 aa8.42□□□□□ -1.06
SMC4-224ENST00000494612 SAP130Q9H0E3 1048 aa8.42□□□□□ -1.06
SMC4-224ENST00000494612 KIAA1324LA8MWY0 1029 aaPredicted RBP8.41□□□□□ -1.06
SMC4-224ENST00000494612 ALX3O95076 343 aa8.41□□□□□ -1.06
SMC4-224ENST00000494612 PSAPP07602 524 aa8.41□□□□□ -1.06
SMC4-224ENST00000494612 SRPK2P78362 688 aaKnown RBP8.41□□□□□ -1.06
SMC4-224ENST00000494612 ELOAQ14241 798 aaKnown RBP8.41□□□□□ -1.06
SMC4-224ENST00000494612 ZMIZ1Q9ULJ6 1067 aa8.41□□□□□ -1.06
SMC4-224ENST00000494612 IGLV1-40P01703 118 aa8.4□□□□□ -1.06
SMC4-224ENST00000494612 DCAF11Q8TEB1 546 aa8.4□□□□□ -1.06
SMC4-224ENST00000494612 COL26A1Q96A83 441 aa8.4□□□□□ -1.06
SMC4-224ENST00000494612 RAXQ9Y2V3 346 aa8.4□□□□□ -1.06
SMC4-224ENST00000494612 F8W735 103 aaPredicted RBP8.39□□□□□ -1.07
SMC4-224ENST00000494612 PRMT3O60678 531 aa8.39□□□□□ -1.07
SMC4-224ENST00000494612 MED26O95402 600 aa8.39□□□□□ -1.07
SMC4-224ENST00000494612 TGFB1P01137 390 aa8.39□□□□□ -1.07
SMC4-224ENST00000494612 BRD2P25440 801 aaKnown RBP8.39□□□□□ -1.07
SMC4-224ENST00000494612 SETDB1Q15047 1291 aa8.39□□□□□ -1.07
SMC4-224ENST00000494612 TRIP4Q15650 581 aaPredicted RBP8.39□□□□□ -1.07
SMC4-224ENST00000494612 NLRP13Q86W25 1043 aa8.39□□□□□ -1.07
SMC4-224ENST00000494612 IL22RA1Q8N6P7 574 aa8.39□□□□□ -1.07
SMC4-224ENST00000494612 NSUN5Q96P11 429 aaKnown RBP8.39□□□□□ -1.07
SMC4-224ENST00000494612 TNFRSF10BO14763 440 aa8.38□□□□□ -1.07
SMC4-224ENST00000494612 GRIK1P39086 918 aa8.38□□□□□ -1.07
SMC4-224ENST00000494612 GDF6Q6KF10 455 aaPredicted RBP8.38□□□□□ -1.07
SMC4-224ENST00000494612 C16orf46Q6P387 395 aa8.38□□□□□ -1.07
SMC4-224ENST00000494612 CAPN12Q6ZSI9 719 aa8.38□□□□□ -1.07
SMC4-224ENST00000494612 SRA1Q9HD15 236 aaKnown RBP8.38□□□□□ -1.07
SMC4-224ENST00000494612 STOML1Q9UBI4 398 aa8.38□□□□□ -1.07
SMC4-224ENST00000494612 GHRHP01286 108 aa8.37□□□□□ -1.07
SMC4-224ENST00000494612 GLB1P16278 677 aa8.37□□□□□ -1.07
SMC4-224ENST00000494612 ARID1BQ8NFD5 2236 aaPredicted RBP8.36□□□□□ -1.07
SMC4-224ENST00000494612 INTS5Q6P9B9 1019 aaKnown RBP8.36□□□□□ -1.07
SMC4-224ENST00000494612 Q6ZS46 218 aa8.36□□□□□ -1.07
SMC4-224ENST00000494612 MAP4K3Q8IVH8 894 aa8.36□□□□□ -1.07
SMC4-224ENST00000494612 OR13H1Q8NG92 308 aa8.36□□□□□ -1.07
SMC4-224ENST00000494612 STK32AQ8WU08 396 aa8.36□□□□□ -1.07
SMC4-224ENST00000494612 TRIM33Q9UPN9 1127 aa8.36□□□□□ -1.07
SMC4-224ENST00000494612 COL13A1Q5TAT6 717 aaPredicted RBP8.35□□□□□ -1.07
SMC4-224ENST00000494612 CACTIN-AS1Q8N1I8 211 aa8.35□□□□□ -1.07
SMC4-224ENST00000494612 CXXC1Q9P0U4 656 aaPredicted RBP8.35□□□□□ -1.07
SMC4-224ENST00000494612 TM4SF5O14894 197 aa8.34□□□□□ -1.07
SMC4-224ENST00000494612 DHX15O43143 795 aaKnown RBP8.34□□□□□ -1.07
SMC4-224ENST00000494612 PIK3R5Q8WYR1 880 aa8.34□□□□□ -1.07
SMC4-224ENST00000494612 RBSNQ9H1K0 784 aa8.34□□□□□ -1.07
SMC4-224ENST00000494612 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.33□□□□□ -1.08
SMC4-224ENST00000494612 UBAP1LF5GYI3 381 aa8.33□□□□□ -1.08
SMC4-224ENST00000494612 MUC3BQ9H195 1237 aa8.33□□□□□ -1.08
SMC4-224ENST00000494612 PPME1Q9Y570 386 aa8.33□□□□□ -1.08
SMC4-224ENST00000494612 ATG7O95352 703 aa8.32□□□□□ -1.08
SMC4-224ENST00000494612 NAA30Q147X3 362 aaPredicted RBP8.32□□□□□ -1.08
SMC4-224ENST00000494612 AGGF1Q8N302 714 aaeCLIP8.32□□□□□ -1.08
SMC4-224ENST00000494612 GALNT11Q8NCW6 608 aa8.32□□□□□ -1.08
SMC4-224ENST00000494612 ZBTB39O15060 712 aa8.31□□□□□ -1.08
SMC4-224ENST00000494612 WNT11O96014 354 aa8.31□□□□□ -1.08
SMC4-224ENST00000494612 ZAP70P43403 619 aa8.31□□□□□ -1.08
SMC4-224ENST00000494612 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.31□□□□□ -1.08
SMC4-224ENST00000494612 ZDHHC13Q8IUH4 622 aa8.31□□□□□ -1.08
SMC4-224ENST00000494612 FAM13BQ9NYF5 915 aa8.31□□□□□ -1.08
SMC4-224ENST00000494612 SPINK2P20155 84 aa8.3□□□□□ -1.08
SMC4-224ENST00000494612 ATP11AP98196 1134 aa8.3□□□□□ -1.08
SMC4-224ENST00000494612 NFIAQ12857 509 aa8.3□□□□□ -1.08
SMC4-224ENST00000494612 HYAL2Q12891 473 aa8.3□□□□□ -1.08
SMC4-224ENST00000494612 ADAMTSL4Q6UY14 1074 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms