RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 FAM9BQ8IZU0 186 aa8.77□□□□□ -1.01
VPS52-219ENST00000493379 CDCA7LQ96GN5 454 aa8.77□□□□□ -1.01
VPS52-219ENST00000493379 MIS18AQ9NYP9 233 aa8.77□□□□□ -1.01
VPS52-219ENST00000493379 SOS1Q07889 1333 aaPredicted RBP8.77□□□□□ -1.01
VPS52-219ENST00000493379 DLG5Q8TDM6 1919 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 DDNO94850 711 aaPredicted RBP8.76□□□□□ -1.01
VPS52-219ENST00000493379 GNAI1P63096 354 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 SKIV2LQ15477 1246 aaKnown RBP8.76□□□□□ -1.01
VPS52-219ENST00000493379 LRP10Q7Z4F1 713 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 LDHDQ86WU2 507 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 HOMEZQ8IX15 550 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 CCDC87Q9NVE4 849 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 LHX6Q9UPM6 363 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 RTCBQ9Y3I0 505 aaKnown RBP8.76□□□□□ -1.01
VPS52-219ENST00000493379 C4AP0C0L4 1744 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 CEP290O15078 2479 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 ERBB4Q15303 1308 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 UNC80Q8N2C7 3258 aa8.76□□□□□ -1.01
VPS52-219ENST00000493379 IL6STP40189 918 aaPredicted RBP8.75□□□□□ -1.01
VPS52-219ENST00000493379 TRAPPC3LQ5T215 181 aa8.75□□□□□ -1.01
VPS52-219ENST00000493379 TRMT2AQ8IZ69 625 aaKnown RBP8.75□□□□□ -1.01
VPS52-219ENST00000493379 ZNF710Q8N1W2 664 aa8.75□□□□□ -1.01
VPS52-219ENST00000493379 COL25A1Q9BXS0 654 aaPredicted RBP8.75□□□□□ -1.01
VPS52-219ENST00000493379 SCUBE2Q9NQ36 999 aa8.75□□□□□ -1.01
VPS52-219ENST00000493379 MBIPQ9NS73 344 aa8.75□□□□□ -1.01
VPS52-219ENST00000493379 TSPYL4Q9UJ04 414 aa8.75□□□□□ -1.01
VPS52-219ENST00000493379 MYH14Q7Z406 1995 aaKnown RBP8.74□□□□□ -1.01
VPS52-219ENST00000493379 PRAMEF22A3QJZ6 481 aa8.74□□□□□ -1.01
VPS52-219ENST00000493379 NBPF26B4DH59 902 aa8.74□□□□□ -1.01
VPS52-219ENST00000493379 EAPPQ56P03 285 aaPredicted RBP8.74□□□□□ -1.01
VPS52-219ENST00000493379 MAP1SQ66K74 1059 aaPredicted RBP8.74□□□□□ -1.01
VPS52-219ENST00000493379 NBPF10Q6P3W6 841 aaKnown RBP8.74□□□□□ -1.01
VPS52-219ENST00000493379 BCL2L12Q9HB09 334 aa8.74□□□□□ -1.01
VPS52-219ENST00000493379 FAM198AQ9UFP1 575 aa8.74□□□□□ -1.01
VPS52-219ENST00000493379 ZBTB1Q9Y2K1 713 aa8.74□□□□□ -1.01
VPS52-219ENST00000493379 COL5A3P25940 1745 aaPredicted RBP8.74□□□□□ -1.01
VPS52-219ENST00000493379 A1BGP04217 495 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 COL9A1P20849 921 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 TM4SF1P30408 202 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 PPP4R3BQ5MIZ7 849 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 MAMSTRQ6ZN01 415 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 NLGN1Q8N2Q7 840 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 CHMP4AQ9BY43 222 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 NARFQ9UHQ1 456 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 RAPGEFL1Q9UHV5 662 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 TJP1Q07157 1748 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 KDM3BQ7LBC6 1761 aa8.73□□□□□ -1.01
VPS52-219ENST00000493379 DICER1Q9UPY3 1922 aaKnown RBP8.72□□□□□ -1.01
VPS52-219ENST00000493379 A0A087WZG4 1122 aa8.72□□□□□ -1.01
VPS52-219ENST00000493379 NFKBIEO00221 500 aa8.72□□□□□ -1.01
VPS52-219ENST00000493379 GYS1P13807 737 aa8.72□□□□□ -1.01
VPS52-219ENST00000493379 ECE1P42892 770 aa8.72□□□□□ -1.01
VPS52-219ENST00000493379 CLEC4GQ6UXB4 293 aa8.72□□□□□ -1.01
VPS52-219ENST00000493379 TAF1DQ9H5J8 278 aaPredicted RBP8.72□□□□□ -1.01
VPS52-219ENST00000493379 USP42Q9H9J4 1324 aaKnown RBP8.72□□□□□ -1.01
VPS52-219ENST00000493379 ADAMTSL1Q8N6G6 1762 aa8.71□□□□□ -1.01
VPS52-219ENST00000493379 ERVV-1B6SEH8 477 aa8.71□□□□□ -1.02
VPS52-219ENST00000493379 MYSM1Q5VVJ2 828 aa8.71□□□□□ -1.02
VPS52-219ENST00000493379 DUSP27Q5VZP5 1158 aa8.71□□□□□ -1.02
VPS52-219ENST00000493379 CIAPIN1Q6FI81 312 aa8.71□□□□□ -1.02
VPS52-219ENST00000493379 CNTROBQ8N137 903 aa8.71□□□□□ -1.02
VPS52-219ENST00000493379 C8orf58Q8NAV2 365 aa8.71□□□□□ -1.02
VPS52-219ENST00000493379 PROCA1Q8NCQ7 364 aaPredicted RBP8.71□□□□□ -1.02
VPS52-219ENST00000493379 HPS5Q9UPZ3 1129 aa8.71□□□□□ -1.02
VPS52-219ENST00000493379 CACNA1AO00555 2505 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 PPP1R3GB7ZBB8 358 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 CA12O43570 354 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 VAMP4O75379 141 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 CAMTA2O94983 1202 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 RFC4P35249 363 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 SLFN5Q08AF3 891 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 KRT24Q2M2I5 525 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 ZIC5Q96T25 663 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 DDX21Q9NR30 783 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS52-219ENST00000493379 POLR3EQ9NVU0 708 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 COL15A1P39059 1388 aa8.7□□□□□ -1.02
VPS52-219ENST00000493379 VCANP13611 3396 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 RCCD1A6NED2 376 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 E9PSI1 815 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 PTPREP23469 700 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 CANXP27824 592 aaKnown RBP8.69□□□□□ -1.02
VPS52-219ENST00000493379 MAP2K2P36507 400 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 ERFEQ4G0M1 354 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 TSPYL6Q8N831 410 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.69□□□□□ -1.02
VPS52-219ENST00000493379 MYH16Q9H6N6 1097 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 DBF4Q9UBU7 674 aaPredicted RBP8.69□□□□□ -1.02
VPS52-219ENST00000493379 PARP3Q9Y6F1 533 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 RANBP2P49792 3224 aaKnown RBP8.69□□□□□ -1.02
VPS52-219ENST00000493379 BRCA2P51587 3418 aa8.69□□□□□ -1.02
VPS52-219ENST00000493379 SCN4AP35499 1836 aa8.68□□□□□ -1.02
VPS52-219ENST00000493379 ZPR1O75312 459 aa8.68□□□□□ -1.02
VPS52-219ENST00000493379 MCM6Q14566 821 aa8.68□□□□□ -1.02
VPS52-219ENST00000493379 USPL1Q5W0Q7 1092 aa8.68□□□□□ -1.02
VPS52-219ENST00000493379 ZNF428Q96B54 188 aa8.68□□□□□ -1.02
VPS52-219ENST00000493379 TBC1D2Q9BYX2 928 aa8.68□□□□□ -1.02
VPS52-219ENST00000493379 LAS1LQ9Y4W2 734 aaKnown RBP8.68□□□□□ -1.02
VPS52-219ENST00000493379 FANCIQ9NVI1 1328 aa8.68□□□□□ -1.02
VPS52-219ENST00000493379 C3orf80F5H4A9 247 aa8.67□□□□□ -1.02
VPS52-219ENST00000493379 POLRMTO00411 1230 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms