RNA–Protein interactions for RNA: ENST00000471987.1

CD46-213, Transcript of CD46 molecule, humanhuman

TSL 3

Gene CD46, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-213ENST00000471987 USP21Q9UK80 565 aa9.74□□□□□ -0.85
CD46-213ENST00000471987 PPP1R15AO75807 674 aaPredicted RBP9.73□□□□□ -0.85
CD46-213ENST00000471987 NKAPLQ5M9Q1 402 aa9.73□□□□□ -0.85
CD46-213ENST00000471987 TXNRD3Q86VQ6 643 aa9.73□□□□□ -0.85
CD46-213ENST00000471987 GPR152Q8TDT2 470 aa9.73□□□□□ -0.85
CD46-213ENST00000471987 SEPT3Q9UH03 358 aa9.73□□□□□ -0.85
CD46-213ENST00000471987 ZBTB39O15060 712 aa9.72□□□□□ -0.85
CD46-213ENST00000471987 OR13H1Q8NG92 308 aa9.72□□□□□ -0.85
CD46-213ENST00000471987 TTC39BQ5VTQ0 682 aaPredicted RBP9.7□□□□□ -0.86
CD46-213ENST00000471987 GDF6Q6KF10 455 aaPredicted RBP9.7□□□□□ -0.86
CD46-213ENST00000471987 ITGB7P26010 798 aa9.69□□□□□ -0.86
CD46-213ENST00000471987 IGF2-ASQ6U949 168 aa9.69□□□□□ -0.86
CD46-213ENST00000471987 CACTIN-AS1Q8N1I8 211 aa9.69□□□□□ -0.86
CD46-213ENST00000471987 HELQQ8TDG4 1101 aa9.69□□□□□ -0.86
CD46-213ENST00000471987 SPACA7Q96KW9 195 aa9.69□□□□□ -0.86
CD46-213ENST00000471987 DYRK3O43781 588 aa9.68□□□□□ -0.86
CD46-213ENST00000471987 HYAL2Q12891 473 aa9.68□□□□□ -0.86
CD46-213ENST00000471987 IL22RA1Q8N6P7 574 aa9.68□□□□□ -0.86
CD46-213ENST00000471987 SRA1Q9HD15 236 aaKnown RBP9.68□□□□□ -0.86
CD46-213ENST00000471987 ABI2Q9NYB9 513 aaPredicted RBP9.68□□□□□ -0.86
CD46-213ENST00000471987 DEAF1O75398 565 aaPredicted RBP9.67□□□□□ -0.86
CD46-213ENST00000471987 RPLP1P05386 114 aaKnown RBP9.67□□□□□ -0.86
CD46-213ENST00000471987 SCNN1AP37088 669 aa9.67□□□□□ -0.86
CD46-213ENST00000471987 PDE12Q6L8Q7 609 aaKnown RBP9.67□□□□□ -0.86
CD46-213ENST00000471987 DCAF11Q8TEB1 546 aa9.67□□□□□ -0.86
CD46-213ENST00000471987 TMEM88BA6NKF7 163 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 H2AFB1P0C5Y9 115 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 H2AFB2P0C5Z0 115 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 C14orf37Q86TY3 774 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 KRTAP1-3Q8IUG1 177 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 MAP4K3Q8IVH8 894 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 NUDT16Q96DE0 195 aaKnown RBP9.66□□□□□ -0.86
CD46-213ENST00000471987 MUC3BQ9H195 1237 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 C1orf115Q9H7X2 142 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 TRIM33Q9UPN9 1127 aa9.66□□□□□ -0.86
CD46-213ENST00000471987 DLL1O00548 723 aa9.65□□□□□ -0.86
CD46-213ENST00000471987 PCSK2P16519 638 aa9.65□□□□□ -0.86
CD46-213ENST00000471987 SSFA2P28290 1259 aa9.65□□□□□ -0.86
CD46-213ENST00000471987 ATCAYQ86WG3 371 aa9.65□□□□□ -0.86
CD46-213ENST00000471987 WFDC12Q8WWY7 111 aa9.65□□□□□ -0.86
CD46-213ENST00000471987 SMNDC1O75940 238 aaKnown RBP eCLIP9.64□□□□□ -0.87
CD46-213ENST00000471987 NOM1Q5C9Z4 860 aaKnown RBP9.64□□□□□ -0.87
CD46-213ENST00000471987 COL13A1Q5TAT6 717 aaPredicted RBP9.64□□□□□ -0.87
CD46-213ENST00000471987 ZNF438Q7Z4V0 828 aa9.64□□□□□ -0.87
CD46-213ENST00000471987 GTF3C2Q8WUA4 911 aaPredicted RBP9.64□□□□□ -0.87
CD46-213ENST00000471987 TP53INP1Q96A56 240 aa9.64□□□□□ -0.87
CD46-213ENST00000471987 ELP3Q9H9T3 547 aa9.64□□□□□ -0.87
CD46-213ENST00000471987 KIF4AO95239 1232 aa9.63□□□□□ -0.87
CD46-213ENST00000471987 IREB2P48200 963 aaKnown RBP9.63□□□□□ -0.87
CD46-213ENST00000471987 Q8N3U1 123 aa9.63□□□□□ -0.87
CD46-213ENST00000471987 TTC16Q8NEE8 873 aa9.63□□□□□ -0.87
CD46-213ENST00000471987 PSMG3-AS1Q96PY0 264 aa9.63□□□□□ -0.87
CD46-213ENST00000471987 SSBP4Q9BWG4 385 aaPredicted RBP9.63□□□□□ -0.87
CD46-213ENST00000471987 PPME1Q9Y570 386 aa9.63□□□□□ -0.87
CD46-213ENST00000471987 ATP11AP98196 1134 aa9.62□□□□□ -0.87
CD46-213ENST00000471987 DNM1Q05193 864 aaKnown RBP9.62□□□□□ -0.87
CD46-213ENST00000471987 ZMYM1Q5SVZ6 1142 aa9.62□□□□□ -0.87
CD46-213ENST00000471987 CEP135Q66GS9 1140 aa9.62□□□□□ -0.87
CD46-213ENST00000471987 NCAPG2Q86XI2 1143 aa9.62□□□□□ -0.87
CD46-213ENST00000471987 EDEM1Q92611 657 aa9.62□□□□□ -0.87
CD46-213ENST00000471987 MTMR7Q9Y216 660 aa9.62□□□□□ -0.87
CD46-213ENST00000471987 CYP2E1P05181 493 aaPredicted RBP9.61□□□□□ -0.87
CD46-213ENST00000471987 NOS3P29474 1203 aa9.61□□□□□ -0.87
CD46-213ENST00000471987 SETDB1Q15047 1291 aa9.61□□□□□ -0.87
CD46-213ENST00000471987 PRSS36Q5K4E3 855 aa9.61□□□□□ -0.87
CD46-213ENST00000471987 ALKBH2Q6NS38 261 aa9.61□□□□□ -0.87
CD46-213ENST00000471987 XKR5Q6UX68 686 aa9.61□□□□□ -0.87
CD46-213ENST00000471987 MRPL18Q9H0U6 180 aaKnown RBP9.61□□□□□ -0.87
CD46-213ENST00000471987 TMEM63CQ9P1W3 806 aa9.61□□□□□ -0.87
CD46-213ENST00000471987 MPSTP25325 297 aa9.6□□□□□ -0.87
CD46-213ENST00000471987 MZF1P28698 734 aaPredicted RBP9.6□□□□□ -0.87
CD46-213ENST00000471987 EIF1AXP47813 144 aaKnown RBP9.6□□□□□ -0.87
CD46-213ENST00000471987 RASSF4Q9H2L5 321 aa9.6□□□□□ -0.87
CD46-213ENST00000471987 AKTIPQ9H8T0 292 aa9.6□□□□□ -0.87
CD46-213ENST00000471987 PDGFAP04085 211 aa9.59□□□□□ -0.87
CD46-213ENST00000471987 CDC27P30260 824 aa9.59□□□□□ -0.87
CD46-213ENST00000471987 C8orf34Q49A92 452 aa9.59□□□□□ -0.87
CD46-213ENST00000471987 TMEM130Q8N3G9 435 aa9.59□□□□□ -0.87
CD46-213ENST00000471987 CEP120Q8N960 986 aa9.59□□□□□ -0.87
CD46-213ENST00000471987 PBX4Q9BYU1 374 aa9.59□□□□□ -0.87
CD46-213ENST00000471987 LACRTQ9GZZ8 138 aa9.59□□□□□ -0.87
CD46-213ENST00000471987 CNTN3Q9P232 1028 aa9.58□□□□□ -0.88
CD46-213ENST00000471987 FAM177BA6PVY3 158 aa9.57□□□□□ -0.88
CD46-213ENST00000471987 CES1P23141 567 aa9.57□□□□□ -0.88
CD46-213ENST00000471987 MEGF10Q96KG7 1140 aa9.57□□□□□ -0.88
CD46-213ENST00000471987 GGNBP2Q9H3C7 697 aa9.57□□□□□ -0.88
CD46-213ENST00000471987 KANSL3Q9P2N6 904 aa9.57□□□□□ -0.88
CD46-213ENST00000471987 F8W735 103 aaPredicted RBP9.56□□□□□ -0.88
CD46-213ENST00000471987 LINC01387J3KSC0 135 aa9.56□□□□□ -0.88
CD46-213ENST00000471987 FAM13AO94988 1023 aa9.56□□□□□ -0.88
CD46-213ENST00000471987 NPR3P17342 541 aa9.56□□□□□ -0.88
CD46-213ENST00000471987 PTPRAP18433 802 aa9.56□□□□□ -0.88
CD46-213ENST00000471987 MTMR3Q13615 1198 aa9.56□□□□□ -0.88
CD46-213ENST00000471987 AAMPQ13685 434 aa9.56□□□□□ -0.88
CD46-213ENST00000471987 PMEPA1Q969W9 287 aa9.56□□□□□ -0.88
CD46-213ENST00000471987 SF3B2Q13435 895 aaKnown RBP9.55□□□□□ -0.88
CD46-213ENST00000471987 PHLDB3Q6NSJ2 640 aa9.55□□□□□ -0.88
CD46-213ENST00000471987 FAM117BQ6P1L5 589 aa9.55□□□□□ -0.88
CD46-213ENST00000471987 DZIP1LQ8IYY4 767 aaKnown RBP9.55□□□□□ -0.88
CD46-213ENST00000471987 C1orf127Q8N9H9 656 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms