RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 ERVV-1B6SEH8 477 aa16.31■□□□□ 0.2
CLK3-203ENST00000454830 PTMSP20962 102 aa16.31■□□□□ 0.2
CLK3-203ENST00000454830 GPR108Q9NPR9 543 aa16.31■□□□□ 0.2
CLK3-203ENST00000454830 LRRC2Q9BYS8 371 aa16.31■□□□□ 0.2
CLK3-203ENST00000454830 BRPF3Q9ULD4 1205 aa16.31■□□□□ 0.2
CLK3-203ENST00000454830 LTBP4Q8N2S1 1624 aa16.31■□□□□ 0.2
CLK3-203ENST00000454830 UBR2Q8IWV8 1755 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 VPS37CA5D8V6 355 aaPredicted RBP16.3■□□□□ 0.2
CLK3-203ENST00000454830 IDH1O75874 414 aaKnown RBP16.3■□□□□ 0.2
CLK3-203ENST00000454830 LARGE1O95461 756 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 ZAP70P43403 619 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 COL16A1Q07092 1604 aaPredicted RBP16.3■□□□□ 0.2
CLK3-203ENST00000454830 ITGB4P16144 1822 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 CSF1RP07333 972 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 CUL4AQ13619 759 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 BARGINQ6ZT62 677 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 SNAP23O00161 211 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 INTS4Q96HW7 963 aaKnown RBP16.3■□□□□ 0.2
CLK3-203ENST00000454830 SEC31BQ9NQW1 1179 aa16.3■□□□□ 0.2
CLK3-203ENST00000454830 U3KPZ7 1027 aaPredicted RBP16.3■□□□□ 0.2
CLK3-203ENST00000454830 LRRFIP1Q32MZ4 808 aaKnown RBP16.29■□□□□ 0.2
CLK3-203ENST00000454830 VPS53Q5VIR6 699 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 PTF1AQ7RTS3 328 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 ZNF652Q9Y2D9 606 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 CAVIN1Q6NZI2 390 aaKnown RBP16.29■□□□□ 0.2
CLK3-203ENST00000454830 TTC14Q96N46 770 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 GDPD2Q9HCC8 539 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 ZSWIM6Q9HCJ5 1215 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 ZDHHC9Q9Y397 364 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 RNF113AO15541 343 aaKnown RBP16.29■□□□□ 0.2
CLK3-203ENST00000454830 SCARF1Q14162 830 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 CDHR2Q9BYE9 1310 aa16.29■□□□□ 0.2
CLK3-203ENST00000454830 APPP05067 770 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 L1TD1Q5T7N2 865 aaKnown RBP16.28■□□□□ 0.2
CLK3-203ENST00000454830 PLA2G12BQ9BX93 195 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 ZNF609O15014 1411 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 ZNF34Q8IZ26 560 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 NEK1Q96PY6 1258 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 TAOK2Q9UL54 1235 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 IGHMBP2P38935 993 aaKnown RBP16.28■□□□□ 0.2
CLK3-203ENST00000454830 HAND2P61296 217 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 COL9A3Q14050 684 aaPredicted RBP16.28■□□□□ 0.2
CLK3-203ENST00000454830 CCDC24Q8N4L8 307 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 HMG20BQ9P0W2 317 aa16.28■□□□□ 0.2
CLK3-203ENST00000454830 ZSCAN31Q96LW9 406 aaPredicted RBP16.27■□□□□ 0.2
CLK3-203ENST00000454830 WDR33Q9C0J8 1336 aaKnown RBP16.27■□□□□ 0.2
CLK3-203ENST00000454830 GJB2P29033 226 aa16.27■□□□□ 0.2
CLK3-203ENST00000454830 TM6SF1Q9BZW5 370 aa16.27■□□□□ 0.2
CLK3-203ENST00000454830 RTN4Q9NQC3 1192 aaKnown RBP16.27■□□□□ 0.2
CLK3-203ENST00000454830 TUBGCP6Q96RT7 1819 aa16.27■□□□□ 0.19
CLK3-203ENST00000454830 MED23Q9ULK4 1368 aa16.27■□□□□ 0.19
CLK3-203ENST00000454830 KRT32Q14532 448 aa16.27■□□□□ 0.19
CLK3-203ENST00000454830 RIPOR2Q9Y4F9 1068 aa16.27■□□□□ 0.19
CLK3-203ENST00000454830 ME3Q16798 604 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 CCDC152Q4G0S7 254 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 JCADQ9P266 1359 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 PHF14O94880 888 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 CAMTA2O94983 1202 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 VPS72Q15906 364 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 FBXO3Q9UK99 471 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 IQSEC3Q9UPP2 1182 aaPredicted RBP16.26■□□□□ 0.19
CLK3-203ENST00000454830 RPS6KB1P23443 525 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 PARP10Q53GL7 1025 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 AEBP2Q6ZN18 517 aaPredicted RBP16.26■□□□□ 0.19
CLK3-203ENST00000454830 SH2B1Q9NRF2 756 aaPredicted RBP16.26■□□□□ 0.19
CLK3-203ENST00000454830 TPCN1Q9ULQ1 816 aa16.26■□□□□ 0.19
CLK3-203ENST00000454830 GNPATO15228 680 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 PDE8BO95263 885 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 CYP21A2P08686 494 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 FOSBP53539 338 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.25■□□□□ 0.191e-6■■□□□ 12.7
CLK3-203ENST00000454830 HELLSQ9NRZ9 838 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 PAPPAQ13219 1627 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 CYP2E1P05181 493 aaPredicted RBP16.25■□□□□ 0.19
CLK3-203ENST00000454830 PHKA1P46020 1223 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 CHST3Q7LGC8 479 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 LINC00116Q8NCU8 138 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 BRD1O95696 1058 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 ANKRD1Q15327 319 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 TTLL5Q6EMB2 1281 aa16.25■□□□□ 0.19
CLK3-203ENST00000454830 DOT1LQ8TEK3 1739 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 MAST3O60307 1309 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 PLCH1Q4KWH8 1693 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 PPFIA3O75145 1194 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 ZMYM1Q5SVZ6 1142 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 SLC9C2Q5TAH2 1124 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 M0R2C6 588 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 STX6O43752 255 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 ZPR1O75312 459 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 SLC5A1P13866 664 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 Q6ZUG5 572 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 OSBP2Q969R2 916 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 CCNL1Q9UK58 526 aaPredicted RBP16.24■□□□□ 0.19
CLK3-203ENST00000454830 SYT1P21579 422 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 FERMT3Q86UX7 667 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 BRF1Q92994 677 aa16.24■□□□□ 0.19
CLK3-203ENST00000454830 HSPD1P10809 573 aaKnown RBP16.23■□□□□ 0.19
CLK3-203ENST00000454830 MCAMP43121 646 aa16.23■□□□□ 0.19
CLK3-203ENST00000454830 NUP188Q5SRE5 1749 aa16.23■□□□□ 0.19
CLK3-203ENST00000454830 PUM3Q15397 648 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms