RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 LAMA4Q16363 1823 aa25.87■■□□□ 1.73
SHMT1-202ENST00000352886 CIAO1O76071 339 aa25.87■■□□□ 1.73
SHMT1-202ENST00000352886 Q6ZUG5 572 aa25.87■■□□□ 1.73
SHMT1-202ENST00000352886 HELLSQ9NRZ9 838 aa25.86■■□□□ 1.73
SHMT1-202ENST00000352886 KRT85P78386 507 aa25.86■■□□□ 1.73
SHMT1-202ENST00000352886 TCIRG1Q13488 830 aa25.86■■□□□ 1.73
SHMT1-202ENST00000352886 NOL7Q9UMY1 257 aaKnown RBP25.86■■□□□ 1.73
SHMT1-202ENST00000352886 IFIT1P09914 478 aaKnown RBP25.85■■□□□ 1.73
SHMT1-202ENST00000352886 FAM184AQ8NB25 1140 aa25.85■■□□□ 1.73
SHMT1-202ENST00000352886 GTF3C6Q969F1 213 aa25.85■■□□□ 1.73
SHMT1-202ENST00000352886 FAM173BQ6P4H8 233 aa25.85■■□□□ 1.73
SHMT1-202ENST00000352886 CCDC57Q2TAC2 916 aa25.84■■□□□ 1.73
SHMT1-202ENST00000352886 HSP90B1P14625 803 aaKnown RBP25.84■■□□□ 1.73
SHMT1-202ENST00000352886 STOX1Q6ZVD7 989 aa25.84■■□□□ 1.73
SHMT1-202ENST00000352886 ASAP1Q9ULH1 1129 aa25.84■■□□□ 1.73
SHMT1-202ENST00000352886 ZMYM1Q5SVZ6 1142 aa25.83■■□□□ 1.73
SHMT1-202ENST00000352886 TTC6Q86TZ1 520 aa25.83■■□□□ 1.73
SHMT1-202ENST00000352886 CEP126Q9P2H0 1117 aa25.83■■□□□ 1.73
SHMT1-202ENST00000352886 DNAJC10Q8IXB1 793 aa25.83■■□□□ 1.72
SHMT1-202ENST00000352886 DSCC1Q9BVC3 393 aa25.83■■□□□ 1.72
SHMT1-202ENST00000352886 LRRC2Q9BYS8 371 aa25.83■■□□□ 1.72
SHMT1-202ENST00000352886 SPEF2Q9C093 1822 aa25.82■■□□□ 1.72
SHMT1-202ENST00000352886 JAK2O60674 1132 aa25.82■■□□□ 1.72
SHMT1-202ENST00000352886 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.82■■□□□ 1.72
SHMT1-202ENST00000352886 PIGBQ92521 554 aa25.82■■□□□ 1.72
SHMT1-202ENST00000352886 BRF1Q92994 677 aa25.82■■□□□ 1.72
SHMT1-202ENST00000352886 HCLS1P14317 486 aaPredicted RBP25.81■■□□□ 1.72
SHMT1-202ENST00000352886 FGD1P98174 961 aa25.81■■□□□ 1.72
SHMT1-202ENST00000352886 GIMAP6Q6P9H5 292 aa25.81■■□□□ 1.72
SHMT1-202ENST00000352886 KIF6Q6ZMV9 814 aa25.81■■□□□ 1.72
SHMT1-202ENST00000352886 TICAM2Q86XR7 235 aa25.81■■□□□ 1.72
SHMT1-202ENST00000352886 FAM89AQ96GI7 184 aa25.81■■□□□ 1.72
SHMT1-202ENST00000352886 CCDC39Q9UFE4 941 aa25.81■■□□□ 1.72
SHMT1-202ENST00000352886 CCDC85AQ96PX6 553 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-202ENST00000352886 HMGB1P09429 215 aaKnown RBP25.8■■□□□ 1.72
SHMT1-202ENST00000352886 UVSSAQ2YD98 709 aa25.8■■□□□ 1.72
SHMT1-202ENST00000352886 MAST3O60307 1309 aa25.8■■□□□ 1.72
SHMT1-202ENST00000352886 RNF113AO15541 343 aaKnown RBP25.79■■□□□ 1.72
SHMT1-202ENST00000352886 HSPD1P10809 573 aaKnown RBP25.79■■□□□ 1.72
SHMT1-202ENST00000352886 TRIM28Q13263 835 aaKnown RBP25.79■■□□□ 1.72
SHMT1-202ENST00000352886 TEX13AQ9BXU3 409 aaPredicted RBP25.79■■□□□ 1.72
SHMT1-202ENST00000352886 ELP1O95163 1332 aa25.79■■□□□ 1.72
SHMT1-202ENST00000352886 ITGB4P16144 1822 aa25.79■■□□□ 1.72
SHMT1-202ENST00000352886 ZKSCAN5Q9Y2L8 839 aa25.79■■□□□ 1.72
SHMT1-202ENST00000352886 NHSL1Q5SYE7 1610 aa25.79■■□□□ 1.72
SHMT1-202ENST00000352886 PCCAP05165 728 aaPredicted RBP25.78■■□□□ 1.72
SHMT1-202ENST00000352886 FKBP4Q02790 459 aaKnown RBP eCLIP25.78■■□□□ 1.72
SHMT1-202ENST00000352886 DHX32Q7L7V1 743 aaKnown RBP25.78■■□□□ 1.72
SHMT1-202ENST00000352886 VSIG10Q8N0Z9 540 aa25.78■■□□□ 1.72
SHMT1-202ENST00000352886 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.78■■□□□ 1.72
SHMT1-202ENST00000352886 SCRN1Q12765 414 aa25.78■■□□□ 1.72
SHMT1-202ENST00000352886 FUCA2Q9BTY2 467 aa25.78■■□□□ 1.72
SHMT1-202ENST00000352886 KAT6BQ8WYB5 2073 aa25.77■■□□□ 1.72
SHMT1-202ENST00000352886 A0A0G2JLW4 131 aa25.77■■□□□ 1.72
SHMT1-202ENST00000352886 STARD3NLO95772 234 aa25.77■■□□□ 1.72
SHMT1-202ENST00000352886 ADORA1P30542 326 aa25.77■■□□□ 1.72
SHMT1-202ENST00000352886 CCDC158Q5M9N0 1113 aa25.77■■□□□ 1.72
SHMT1-202ENST00000352886 GORABQ5T7V8 394 aa25.77■■□□□ 1.72
SHMT1-202ENST00000352886 SCAND2PQ9GZW5 306 aaPredicted RBP25.77■■□□□ 1.72
SHMT1-202ENST00000352886 FBXO3Q9UK99 471 aa25.77■■□□□ 1.72
SHMT1-202ENST00000352886 AKAP2Q9Y2D5 859 aa25.77■■□□□ 1.72
SHMT1-202ENST00000352886 TAF7LQ5H9L4 462 aa25.76■■□□□ 1.71
SHMT1-202ENST00000352886 TTC39AQ5SRH9 613 aa25.76■■□□□ 1.71
SHMT1-202ENST00000352886 ZBTB38Q8NAP3 1195 aaPredicted RBP25.76■■□□□ 1.71
SHMT1-202ENST00000352886 DDX11Q96FC9 970 aa25.76■■□□□ 1.71
SHMT1-202ENST00000352886 XAGE2Q96GT9 111 aa25.76■■□□□ 1.71
SHMT1-202ENST00000352886 BTG4Q9NY30 223 aa25.76■■□□□ 1.71
SHMT1-202ENST00000352886 TFIP11Q9UBB9 837 aaKnown RBP25.76■■□□□ 1.71
SHMT1-202ENST00000352886 USP25Q9UHP3 1055 aa25.76■■□□□ 1.71
SHMT1-202ENST00000352886 M0R2C6 588 aa25.75■■□□□ 1.71
SHMT1-202ENST00000352886 KLHL34Q8N239 644 aa25.75■■□□□ 1.71
SHMT1-202ENST00000352886 SPATA32Q96LK8 384 aa25.75■■□□□ 1.71
SHMT1-202ENST00000352886 PLA2G12BQ9BX93 195 aa25.75■■□□□ 1.71
SHMT1-202ENST00000352886 ZNF500O60304 480 aaPredicted RBP25.75■■□□□ 1.71
SHMT1-202ENST00000352886 PTMAP06454 111 aaKnown RBP25.75■■□□□ 1.71
SHMT1-202ENST00000352886 IFIT5Q13325 482 aaKnown RBP25.75■■□□□ 1.71
SHMT1-202ENST00000352886 E7EWF7 191 aa25.74■■□□□ 1.71
SHMT1-202ENST00000352886 MAP3K15Q6ZN16 1313 aa25.74■■□□□ 1.71
SHMT1-202ENST00000352886 PFKFB2O60825 505 aa25.74■■□□□ 1.71
SHMT1-202ENST00000352886 CSF1RP07333 972 aa25.74■■□□□ 1.71
SHMT1-202ENST00000352886 EXOSC10Q01780 885 aaKnown RBP25.74■■□□□ 1.71
SHMT1-202ENST00000352886 OSBP2Q969R2 916 aa25.74■■□□□ 1.71
SHMT1-202ENST00000352886 H3BQV1 296 aa25.73■■□□□ 1.71
SHMT1-202ENST00000352886 LIG1P18858 919 aa25.73■■□□□ 1.71
SHMT1-202ENST00000352886 MCM5P33992 734 aa25.73■■□□□ 1.71
SHMT1-202ENST00000352886 APOBRQ0VD83 1088 aa25.73■■□□□ 1.71
SHMT1-202ENST00000352886 IFFO2Q5TF58 517 aa25.73■■□□□ 1.71
SHMT1-202ENST00000352886 GIGYF2Q6Y7W6 1299 aaKnown RBP25.73■■□□□ 1.71
SHMT1-202ENST00000352886 SYNE4Q8N205 404 aa25.73■■□□□ 1.71
SHMT1-202ENST00000352886 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.73■■□□□ 1.71
SHMT1-202ENST00000352886 SMARCC2Q8TAQ2 1214 aa25.73■■□□□ 1.71
SHMT1-202ENST00000352886 LEO1Q8WVC0 666 aaPredicted RBP25.73■■□□□ 1.71
SHMT1-202ENST00000352886 OFD1O75665 1012 aa25.72■■□□□ 1.71
SHMT1-202ENST00000352886 GPTP24298 496 aa25.72■■□□□ 1.71
SHMT1-202ENST00000352886 HLFQ16534 295 aa25.72■■□□□ 1.71
SHMT1-202ENST00000352886 LLPHQ9BRT6 129 aaKnown RBP25.72■■□□□ 1.71
SHMT1-202ENST00000352886 GOLGA6L4A6NEF3 574 aa25.72■■□□□ 1.71
SHMT1-202ENST00000352886 RESTQ13127 1097 aa25.72■■□□□ 1.71
SHMT1-202ENST00000352886 AGXT2Q9BYV1 514 aa25.72■■□□□ 1.71
SHMT1-202ENST00000352886 SCARF1Q14162 830 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms