RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 UPF1Q92900 1129 aaKnown RBP eCLIP27.53■■■□□ 2
CDX1-201ENST00000231656 SEC31BQ9NQW1 1179 aa27.53■■■□□ 2
CDX1-201ENST00000231656 TFCP2Q12800 502 aa27.53■■■□□ 2
CDX1-201ENST00000231656 TNRC6CQ9HCJ0 1690 aaKnown RBP27.52■■■□□ 2
CDX1-201ENST00000231656 LDHAL6AQ6ZMR3 332 aa27.51■■□□□ 1.99
CDX1-201ENST00000231656 SLKQ9H2G2 1235 aaPredicted RBP27.51■■□□□ 1.99
CDX1-201ENST00000231656 MSL1Q68DK7 614 aa27.5■■□□□ 1.99
CDX1-201ENST00000231656 RIC1Q4ADV7 1423 aa27.5■■□□□ 1.99
CDX1-201ENST00000231656 TAF1P21675 1872 aa27.5■■□□□ 1.99
CDX1-201ENST00000231656 LRP5O75197 1615 aa27.5■■□□□ 1.99
CDX1-201ENST00000231656 ST5P78524 1137 aa27.5■■□□□ 1.99
CDX1-201ENST00000231656 EAF2Q96CJ1 260 aaPredicted RBP27.5■■□□□ 1.99
CDX1-201ENST00000231656 NRXN2Q9P2S2 1712 aa27.5■■□□□ 1.99
CDX1-201ENST00000231656 SPEF2Q9C093 1822 aa27.49■■□□□ 1.99
CDX1-201ENST00000231656 GLRX3O76003 335 aaKnown RBP27.49■■□□□ 1.99
CDX1-201ENST00000231656 AACSQ86V21 672 aa27.49■■□□□ 1.99
CDX1-201ENST00000231656 ECHDC1Q9NTX5 307 aa27.49■■□□□ 1.99
CDX1-201ENST00000231656 RIPOR2Q9Y4F9 1068 aa27.49■■□□□ 1.99
CDX1-201ENST00000231656 MMP10P09238 476 aa27.48■■□□□ 1.99
CDX1-201ENST00000231656 IFIT2P09913 472 aaKnown RBP27.48■■□□□ 1.99
CDX1-201ENST00000231656 NFKBIBQ15653 356 aa27.48■■□□□ 1.99
CDX1-201ENST00000231656 CNNM1Q9NRU3 951 aa27.48■■□□□ 1.99
CDX1-201ENST00000231656 COL4A1P02462 1669 aa27.48■■□□□ 1.99
CDX1-201ENST00000231656 RABEP1Q15276 862 aa27.48■■□□□ 1.99
CDX1-201ENST00000231656 PDGFDQ9GZP0 370 aaPredicted RBP27.48■■□□□ 1.99
CDX1-201ENST00000231656 MAP4K4O95819 1239 aaPredicted RBP27.47■■□□□ 1.99
CDX1-201ENST00000231656 TNNI3KQ59H18 835 aa27.47■■□□□ 1.99
CDX1-201ENST00000231656 GPATCH3Q96I76 525 aa27.47■■□□□ 1.99
CDX1-201ENST00000231656 CDC5LQ99459 802 aaKnown RBP27.47■■□□□ 1.99
CDX1-201ENST00000231656 FPGT-TNNI3KV9GXZ4 949 aa27.47■■□□□ 1.99
CDX1-201ENST00000231656 CD2BP2O95400 341 aaKnown RBP27.46■■□□□ 1.99
CDX1-201ENST00000231656 CNTROBQ8N137 903 aa27.46■■□□□ 1.99
CDX1-201ENST00000231656 PARP3Q9Y6F1 533 aa27.46■■□□□ 1.99
CDX1-201ENST00000231656 MPHOSPH8Q99549 860 aa27.45■■□□□ 1.99
CDX1-201ENST00000231656 CEP126Q9P2H0 1117 aa27.45■■□□□ 1.99
CDX1-201ENST00000231656 IGHMBP2P38935 993 aaKnown RBP27.45■■□□□ 1.98
CDX1-201ENST00000231656 CCDC8Q9H0W5 538 aaPredicted RBP27.45■■□□□ 1.98
CDX1-201ENST00000231656 GPR108Q9NPR9 543 aa27.45■■□□□ 1.98
CDX1-201ENST00000231656 SPRYD3Q8NCJ5 442 aa27.43■■□□□ 1.98
CDX1-201ENST00000231656 TLR7Q9NYK1 1049 aaKnown RBP27.43■■□□□ 1.98
CDX1-201ENST00000231656 ANKRD31Q8N7Z5 1873 aa27.43■■□□□ 1.98
CDX1-201ENST00000231656 METTL24Q5JXM2 366 aa27.43■■□□□ 1.98
CDX1-201ENST00000231656 ANKRD18AQ8IVF6 992 aa27.43■■□□□ 1.98
CDX1-201ENST00000231656 CELF1Q92879 486 aaKnown RBP27.42■■□□□ 1.98
CDX1-201ENST00000231656 CRY2Q49AN0 593 aa27.41■■□□□ 1.98
CDX1-201ENST00000231656 DDX46Q7L014 1031 aaKnown RBP27.41■■□□□ 1.98
CDX1-201ENST00000231656 MROH5Q6ZUA9 1318 aa27.41■■□□□ 1.98
CDX1-201ENST00000231656 ZNF609O15014 1411 aa27.4■■□□□ 1.98
CDX1-201ENST00000231656 K7ELQ4 463 aaPredicted RBP27.4■■□□□ 1.98
CDX1-201ENST00000231656 VGLL2Q8N8G2 317 aa27.4■■□□□ 1.98
CDX1-201ENST00000231656 IL25Q9H293 177 aa27.4■■□□□ 1.98
CDX1-201ENST00000231656 DBNLQ9UJU6 430 aaKnown RBP27.4■■□□□ 1.98
CDX1-201ENST00000231656 EPB41L2O43491 1005 aaKnown RBP27.4■■□□□ 1.98
CDX1-201ENST00000231656 SLC16A10Q8TF71 515 aa27.4■■□□□ 1.98
CDX1-201ENST00000231656 AKAP2Q9Y2D5 859 aa27.4■■□□□ 1.98
CDX1-201ENST00000231656 KLRG2A4D1S0 409 aaPredicted RBP27.39■■□□□ 1.98
CDX1-201ENST00000231656 TIMM10P62072 90 aa27.39■■□□□ 1.98
CDX1-201ENST00000231656 BRIP1Q9BX63 1249 aa27.39■■□□□ 1.98
CDX1-201ENST00000231656 BSDC1Q9NW68 430 aaPredicted RBP27.39■■□□□ 1.98
CDX1-201ENST00000231656 A0A1B0GUL7 405 aa27.38■■□□□ 1.97
CDX1-201ENST00000231656 DDIT3P35638 169 aa27.38■■□□□ 1.97
CDX1-201ENST00000231656 RPS8P62241 208 aaKnown RBP27.38■■□□□ 1.97
CDX1-201ENST00000231656 NEUROD6Q96NK8 337 aa27.38■■□□□ 1.97
CDX1-201ENST00000231656 ANO2Q9NQ90 1003 aa27.38■■□□□ 1.97
CDX1-201ENST00000231656 SGSM2O43147 1006 aa27.37■■□□□ 1.97
CDX1-201ENST00000231656 PDE8BO95263 885 aa27.37■■□□□ 1.97
CDX1-201ENST00000231656 DBNDD2Q9BQY9 259 aa27.37■■□□□ 1.97
CDX1-201ENST00000231656 RPGRQ92834 1020 aaKnown RBP27.37■■□□□ 1.97
CDX1-201ENST00000231656 HELBQ8NG08 1087 aaPredicted RBP27.36■■□□□ 1.97
CDX1-201ENST00000231656 IL17RAQ96F46 866 aa27.36■■□□□ 1.97
CDX1-201ENST00000231656 CHMP5Q9NZZ3 219 aa27.36■■□□□ 1.97
CDX1-201ENST00000231656 EVI5LQ96CN4 794 aa27.35■■□□□ 1.97
CDX1-201ENST00000231656 A0A1B0GUL6 1792 aa27.35■■□□□ 1.97
CDX1-201ENST00000231656 FRAT2O75474 233 aaPredicted RBP27.35■■□□□ 1.97
CDX1-201ENST00000231656 MCCP23508 829 aa27.35■■□□□ 1.97
CDX1-201ENST00000231656 CHRNDQ07001 517 aa27.35■■□□□ 1.97
CDX1-201ENST00000231656 GRAPQ13588 217 aa27.35■■□□□ 1.97
CDX1-201ENST00000231656 GRAPLQ8TC17 118 aaPredicted RBP27.35■■□□□ 1.97
CDX1-201ENST00000231656 ANAPC15P60006 121 aa27.34■■□□□ 1.97
CDX1-201ENST00000231656 ATP2B3Q16720 1220 aa27.34■■□□□ 1.97
CDX1-201ENST00000231656 RBM17Q96I25 401 aaKnown RBP27.33■■□□□ 1.97
CDX1-201ENST00000231656 TAF5LO75529 589 aa27.32■■□□□ 1.96
CDX1-201ENST00000231656 HOXA10P31260 410 aaPredicted RBP27.32■■□□□ 1.96
CDX1-201ENST00000231656 PUM3Q15397 648 aaKnown RBP27.32■■□□□ 1.96
CDX1-201ENST00000231656 PALD1Q9ULE6 856 aa27.32■■□□□ 1.96
CDX1-201ENST00000231656 MINPP1Q9UNW1 487 aa27.32■■□□□ 1.96
CDX1-201ENST00000231656 FGFR2P21802 821 aa27.32■■□□□ 1.96
CDX1-201ENST00000231656 PDE6BP35913 854 aa27.32■■□□□ 1.96
CDX1-201ENST00000231656 XAGE2Q96GT9 111 aa27.32■■□□□ 1.96
CDX1-201ENST00000231656 R3HDM1Q15032 1099 aaKnown RBP27.31■■□□□ 1.96
CDX1-201ENST00000231656 ATP5JP18859 108 aa27.3■■□□□ 1.96
CDX1-201ENST00000231656 ADORA1P30542 326 aa27.3■■□□□ 1.96
CDX1-201ENST00000231656 LPIN2Q92539 896 aa27.3■■□□□ 1.96
CDX1-201ENST00000231656 LSG1Q9H089 658 aaKnown RBP27.3■■□□□ 1.96
CDX1-201ENST00000231656 DIAPH3Q9NSV4 1193 aa27.3■■□□□ 1.96
CDX1-201ENST00000231656 RAD50Q92878 1312 aa27.3■■□□□ 1.96
CDX1-201ENST00000231656 COL11A2P13942 1736 aaPredicted RBP27.3■■□□□ 1.96
CDX1-201ENST00000231656 ST18O60284 1047 aa27.3■■□□□ 1.96
CDX1-201ENST00000231656 CWC27Q6UX04 472 aaKnown RBP27.3■■□□□ 1.96
CDX1-201ENST00000231656 CRAMP1Q96RY5 1269 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms