RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 MCHR2Q969V1 340 aa17.88■□□□□ 0.45
SDC1-205ENST00000447124 MRPL24Q96A35 216 aaKnown RBP17.88■□□□□ 0.45
SDC1-205ENST00000447124 RCN3Q96D15 328 aa17.88■□□□□ 0.45
SDC1-205ENST00000447124 SGTBQ96EQ0 304 aa17.88■□□□□ 0.45
SDC1-205ENST00000447124 ZNF347Q96SE7 839 aa17.88■□□□□ 0.45
SDC1-205ENST00000447124 KCNK17Q96T54 332 aa17.88■□□□□ 0.45
SDC1-205ENST00000447124 PIMREGQ9BSJ6 248 aa17.88■□□□□ 0.45
SDC1-205ENST00000447124 POLR2J2Q9GZM3 115 aaKnown RBP17.88■□□□□ 0.45
SDC1-205ENST00000447124 POLR2J3Q9H1A7 115 aaKnown RBP17.88■□□□□ 0.45
SDC1-205ENST00000447124 DENND2DQ9H6A0 471 aaPredicted RBP17.88■□□□□ 0.45
SDC1-205ENST00000447124 CAPN7Q9Y6W3 813 aa17.88■□□□□ 0.45
SDC1-205ENST00000447124 UBL3O95164 117 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 IGF2P01344 180 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 IFNA14P01570 189 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 SERPINA5P05154 406 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 ADRA2AP08913 450 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 OR8G3PP0DMU2 310 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 GLRXP35754 106 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 SELENOWP63302 87 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 MYBPC1Q00872 1141 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 CHRFAM7AQ494W8 412 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 LRRC23Q53EV4 343 aaPredicted RBP17.87■□□□□ 0.45
SDC1-205ENST00000447124 SLC15A3Q8IY34 581 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 OR2T12Q8NG77 320 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 NEU4Q8WWR8 484 aaPredicted RBP17.87■□□□□ 0.45
SDC1-205ENST00000447124 SEPHS2Q99611 448 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 BPESC1Q9GZL8 116 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 MYOZ1Q9NP98 299 aaPredicted RBP17.87■□□□□ 0.45
SDC1-205ENST00000447124 A4GNTQ9UNA3 340 aa17.87■□□□□ 0.45
SDC1-205ENST00000447124 ELOVL7A1L3X0 281 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 PIP5K1CO60331 668 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 TRMUO75648 421 aaKnown RBP17.86■□□□□ 0.45
SDC1-205ENST00000447124 RAB36O95755 333 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 DAOP14920 347 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 ZNF16P17020 682 aaPredicted RBP17.86■□□□□ 0.45
SDC1-205ENST00000447124 ARMC4Q5T2S8 1044 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 ARIH2OSQ8N7S6 290 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 OR4K5Q8NGD3 323 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 ASB10Q8WXI3 467 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 TPD52L3Q96J77 140 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 INIPQ9NRY2 104 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 FBXO9Q9UK97 447 aaPredicted RBP17.86■□□□□ 0.45
SDC1-205ENST00000447124 SNX13Q9Y5W8 968 aa17.86■□□□□ 0.45
SDC1-205ENST00000447124 LYNX1G3V0Z9 82 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 IGHG1P01857 330 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 LYNX1P0DP58 116 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 THRBP10828 461 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 ACADSP16219 412 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 YAP1P46937 504 aaKnown RBP17.85■□□□□ 0.45
SDC1-205ENST00000447124 EVX1P49640 407 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 GZMKP49863 264 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 SEC24CP53992 1094 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 IQCCQ4KMZ1 466 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 ZNF786Q8N393 782 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 PAQR4Q8N4S7 273 aaPredicted RBP17.85■□□□□ 0.45
SDC1-205ENST00000447124 SYT14Q8NB59 555 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 RP9Q8TA86 221 aaKnown RBP17.85■□□□□ 0.45
SDC1-205ENST00000447124 MSI2Q96DH6 328 aaKnown RBP17.85■□□□□ 0.45
SDC1-205ENST00000447124 SOX7Q9BT81 388 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 TPK1Q9H3S4 243 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 DYNLRB1Q9NP97 96 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 TMEM160Q9NX00 188 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 MYEF2Q9P2K5 600 aaKnown RBP17.85■□□□□ 0.45
SDC1-205ENST00000447124 FZR1Q9UM11 496 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 MED31Q9Y3C7 131 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 SPEF1Q9Y4P9 236 aa17.85■□□□□ 0.45
SDC1-205ENST00000447124 SVEP1Q4LDE5 3571 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 IGKV1D-43A0A0B4J1Z2 117 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 A0A1W2PRG6 482 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 SLC22A2O15244 555 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 LMX1BO60663 402 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 COX4I1P13073 169 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 CCL2P13500 99 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 GIFP27352 417 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 ZNF133P52736 654 aaPredicted RBP17.84■□□□□ 0.45
SDC1-205ENST00000447124 CLRN1P58418 232 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 VTCN1Q7Z7D3 282 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 UBASH3BQ8TF42 649 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 NMD3Q96D46 503 aaKnown RBP17.84■□□□□ 0.45
SDC1-205ENST00000447124 SYT3Q9BQG1 590 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 REV1Q9UBZ9 1251 aa17.84■□□□□ 0.45
SDC1-205ENST00000447124 LRP5LA4QPB2 252 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 FFAR1O14842 300 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 SYNGR3O43761 229 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 LILRA1O75019 489 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 APEHP13798 732 aaKnown RBP17.83■□□□□ 0.44
SDC1-205ENST00000447124 ZNF23P17027 643 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 TCN1P20061 433 aaPredicted RBP17.83■□□□□ 0.44
SDC1-205ENST00000447124 MDH1P40925 334 aaKnown RBP17.83■□□□□ 0.44
SDC1-205ENST00000447124 LIPEQ05469 1076 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 GKAP1Q5VSY0 366 aaPredicted RBP17.83■□□□□ 0.44
SDC1-205ENST00000447124 CXXC5Q7LFL8 322 aaKnown RBP17.83■□□□□ 0.44
SDC1-205ENST00000447124 MEX3DQ86XN8 651 aaKnown RBP17.83■□□□□ 0.44
SDC1-205ENST00000447124 TREML1Q86YW5 311 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 HDAC2Q92769 488 aaKnown RBP17.83■□□□□ 0.44
SDC1-205ENST00000447124 MAN2C1Q9NTJ4 1040 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 RHCGQ9UBD6 479 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 FBXL3Q9UKT7 428 aa17.83■□□□□ 0.44
SDC1-205ENST00000447124 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.83■□□□□ 0.446e-8■■■■□ 19.3
SDC1-205ENST00000447124 MXRA5Q9NR99 2828 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms