RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 M0R3G1 203 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 PLPP3O14495 311 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 CRLF1O75462 422 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 IGKV3-15P01624 115 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 NQO1P15559 274 aaKnown RBP18.03■□□□□ 0.48
SDC1-205ENST00000447124 CBR1P16152 277 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 PAX7P23759 505 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 SH3BGRP55822 239 aaPredicted RBP18.03■□□□□ 0.48
SDC1-205ENST00000447124 HGFACQ04756 655 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 CHRNB3Q05901 458 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 SF3A3Q12874 501 aaKnown RBP eCLIP18.03■□□□□ 0.48
SDC1-205ENST00000447124 PMS2P3Q13401 168 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 C3orf36Q3SXR2 165 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 ENTPD8Q5MY95 495 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 SWT1Q5T5J6 900 aaKnown RBP18.03■□□□□ 0.48
SDC1-205ENST00000447124 NANOGP8Q6NSW7 305 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 ZNF613Q6PF04 617 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 FAM169BQ8N8A8 192 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 SCAIQ8N9R8 606 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 PIK3C3Q8NEB9 887 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 SIKE1Q9BRV8 207 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 KATNB1Q9BVA0 655 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 TMEM120AQ9BXJ8 343 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 ASPNQ9BXN1 380 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 NANOGQ9H9S0 305 aa18.03■□□□□ 0.48
SDC1-205ENST00000447124 CPSF4LA6NMK7 179 aaKnown RBP18.02■□□□□ 0.48
SDC1-205ENST00000447124 CD5LO43866 347 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 SEC14L2O76054 403 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 CRYAAP02489 173 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 PCGF2P35227 344 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 EFNA4P52798 201 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 DSCR9P59020 149 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 C10orf53Q8N6V4 93 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 VANGL1Q8TAA9 524 aaPredicted RBP18.02■□□□□ 0.48
SDC1-205ENST00000447124 CA10Q9NS85 328 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 PMF1-BGLAPU3KQ54 211 aa18.02■□□□□ 0.48
SDC1-205ENST00000447124 YLPM1P49750 1951 aaKnown RBP18.01■□□□□ 0.47
SDC1-205ENST00000447124 F12P00748 615 aaPredicted RBP18.01■□□□□ 0.47
SDC1-205ENST00000447124 SERPINF1P36955 418 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 POU3F1Q03052 451 aaPredicted RBP18.01■□□□□ 0.47
SDC1-205ENST00000447124 ADIPOQQ15848 244 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 VMACQ2NL98 169 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 CGB2Q6NT52 195 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 CLEC2AQ6UVW9 174 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 PXKQ7Z7A4 578 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 PATL1Q86TB9 770 aaKnown RBP18.01■□□□□ 0.47
SDC1-205ENST00000447124 CALHM3Q86XJ0 350 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 LRR1Q96L50 414 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 YAE1D1Q9NRH1 226 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 B3GNT2Q9NY97 397 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 USP22Q9UPT9 525 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 NOX1Q9Y5S8 564 aa18.01■□□□□ 0.47
SDC1-205ENST00000447124 ZNF99A8MXY4 864 aaPredicted RBP18■□□□□ 0.47
SDC1-205ENST00000447124 FXYD1O00168 92 aa18■□□□□ 0.47
SDC1-205ENST00000447124 CHP2O43745 196 aa18■□□□□ 0.47
SDC1-205ENST00000447124 AKAP8O43823 692 aaKnown RBP18■□□□□ 0.47
SDC1-205ENST00000447124 AHCYP23526 432 aa18■□□□□ 0.47
SDC1-205ENST00000447124 IDH3GP51553 393 aaPredicted RBP18■□□□□ 0.47
SDC1-205ENST00000447124 PUDPQ08623 228 aa18■□□□□ 0.47
SDC1-205ENST00000447124 CAMK2DQ13557 499 aa18■□□□□ 0.47
SDC1-205ENST00000447124 RABL3Q5HYI8 236 aa18■□□□□ 0.47
SDC1-205ENST00000447124 VHLLQ6RSH7 139 aa18■□□□□ 0.47
SDC1-205ENST00000447124 CCDC80Q76M96 950 aa18■□□□□ 0.47
SDC1-205ENST00000447124 MDP1Q86V88 176 aa18■□□□□ 0.47
SDC1-205ENST00000447124 SLC30A8Q8IWU4 369 aa18■□□□□ 0.47
SDC1-205ENST00000447124 OR5J2Q8NH18 312 aa18■□□□□ 0.47
SDC1-205ENST00000447124 ADAMTS16Q8TE57 1224 aa18■□□□□ 0.47
SDC1-205ENST00000447124 C10orf105Q8TEF2 133 aa18■□□□□ 0.47
SDC1-205ENST00000447124 MDFIQ99750 246 aa18■□□□□ 0.47
SDC1-205ENST00000447124 KCNS3Q9BQ31 491 aa18■□□□□ 0.47
SDC1-205ENST00000447124 TAS2R5Q9NYW4 299 aa18■□□□□ 0.47
SDC1-205ENST00000447124 CH25HO95992 272 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 OR4A8P0C604 315 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 BMP4P12644 408 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 LOXL1Q08397 574 aaPredicted RBP17.99■□□□□ 0.47
SDC1-205ENST00000447124 KLF10Q13118 480 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 CYLC2Q14093 348 aaPredicted RBP17.99■□□□□ 0.47
SDC1-205ENST00000447124 ZNF74Q16587 644 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 TRMT5Q32P41 509 aaKnown RBP17.99■□□□□ 0.47
SDC1-205ENST00000447124 LRRC17Q8N6Y2 441 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 FAM168AQ92567 244 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 LRRC58Q96CX6 371 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 ZNF75AQ96N20 296 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 SORCS2Q96PQ0 1159 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 TNFRSF13CQ96RJ3 184 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 PRSS27Q9BQR3 290 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 NOX3Q9HBY0 568 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 SAR1AQ9NR31 198 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 SLC7A7Q9UM01 511 aa17.99■□□□□ 0.47
SDC1-205ENST00000447124 CHD3Q12873 2000 aaKnown RBP17.99■□□□□ 0.47
SDC1-205ENST00000447124 RTTNQ86VV8 2226 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 ATRQ13535 2644 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 TRAPPC13A5PLN9 417 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 ZNF726A6NNF4 738 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 C11orf98E9PRG8 122 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 TLX2O43763 284 aaPredicted RBP17.98■□□□□ 0.47
SDC1-205ENST00000447124 SERPINI2O75830 405 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 MT-ATP6P00846 226 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 HLA-HP01893 362 aa17.98■□□□□ 0.47
SDC1-205ENST00000447124 TP53P04637 393 aaPredicted RBP17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms