RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ZNF229Q9UJW7 825 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 CHCHD2Q9Y6H1 151 aaPredicted RBP20.44■□□□□ 0.86
CDX1-201ENST00000231656 A0A075B6Q4 140 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 TP53I11O14683 189 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 BGLAPP02818 100 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 CD14P08571 375 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 PRKAR1AP10644 381 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 ITGA3P26006 1051 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 ZNF85Q03923 595 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 DND1Q8IYX4 353 aaKnown RBP20.44■□□□□ 0.86
CDX1-201ENST00000231656 NMNAT3Q96T66 252 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 GALNT9Q9HCQ5 603 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 BABAM2Q9NXR7 383 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 MSRB2Q9Y3D2 182 aa20.44■□□□□ 0.86
CDX1-201ENST00000231656 CPAMD8Q8IZJ3 1885 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 TRDV1A0A1B0GX56 115 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 OR6C68A6NDL8 312 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 FGF9P31371 208 aaPredicted RBP20.43■□□□□ 0.86
CDX1-201ENST00000231656 POLR2HP52434 150 aaKnown RBP20.43■□□□□ 0.86
CDX1-201ENST00000231656 CRTC2Q53ET0 693 aaPredicted RBP20.43■□□□□ 0.86
CDX1-201ENST00000231656 ALG10Q5BKT4 473 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 ZNF468Q5VIY5 522 aaPredicted RBP20.43■□□□□ 0.86
CDX1-201ENST00000231656 Q6ZNX1 250 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 ARIH2OSQ8N7S6 290 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 ZPLD1Q8TCW7 415 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 Q96M85 177 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 METTL7AQ9H8H3 244 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 HPF1Q9NWY4 346 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 KLRF1Q9NZS2 232 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 PEX16Q9Y5Y5 336 aa20.43■□□□□ 0.86
CDX1-201ENST00000231656 TRAV36DV7A0A075B6V5 113 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 TEX13CA0A0J9YWL9 993 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 IMPA2O14732 288 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 TXNDC12O95881 172 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 IL1AP01583 271 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 ZNF12P17014 697 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 CELP19835 753 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 PTGDSP41222 190 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 CASP3P42574 277 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 RPS5P46782 204 aaKnown RBP20.42■□□□□ 0.86
CDX1-201ENST00000231656 ACTC1P68032 377 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 ACTA1P68133 377 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 RPL18Q07020 188 aaKnown RBP20.42■□□□□ 0.86
CDX1-201ENST00000231656 COL28A1Q2UY09 1125 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 TUBA3EQ6PEY2 450 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 SMAP2Q8WU79 429 aaPredicted RBP20.42■□□□□ 0.86
CDX1-201ENST00000231656 ZNRF4Q8WWF5 429 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 ZMYND19Q96E35 227 aaPredicted RBP20.42■□□□□ 0.86
CDX1-201ENST00000231656 KCTD7Q96MP8 289 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 NUAK2Q9H093 628 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 SNTG1Q9NSN8 517 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 ASB6Q9NWX5 421 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 TAS2R10Q9NYW0 307 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 FRYQ5TBA9 3013 aa20.42■□□□□ 0.86
CDX1-201ENST00000231656 TMED7-TICAM2A0A0A6YYA0 188 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 C2orf72A6NCS6 295 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 ARGFXA6NJG6 315 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 TAF4O00268 1085 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 NPIPB7O75200 414 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 SULT1C4O75897 302 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 CDRT1O95170 752 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 DIO1P49895 249 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 CTXN1P60606 82 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 LGALS3BPQ08380 585 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 C17orf67Q0P5P2 114 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 GPR50Q13585 617 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 LCN1P1Q5VSP4 162 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 C1QL3Q5VWW1 255 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 POMZP3Q6PJE2 187 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 GRINAQ7Z429 371 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 NANOGNBQ7Z5D8 188 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 ADGRG3Q86Y34 549 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 POMGNT2Q8NAT1 580 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 KCNE4Q8WWG9 221 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 MED18Q9BUE0 208 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 PTDSS2Q9BVG9 487 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 RERGLQ9H628 205 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 QPCTLQ9NXS2 382 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 TEKT2Q9UIF3 430 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 ZMIZ1Q9ULJ6 1067 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 TMED7Q9Y3B3 224 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 PCDHGB6Q9Y5F9 930 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 SIRT4Q9Y6E7 314 aaPredicted RBP20.41■□□□□ 0.86
CDX1-201ENST00000231656 A0A1W2PQL4 384 aaPredicted RBP20.41■□□□□ 0.86
CDX1-201ENST00000231656 TMEM72A0PK05 275 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 B4DXG7 233 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 TLX3O43711 291 aaPredicted RBP20.41■□□□□ 0.86
CDX1-201ENST00000231656 SUSD5O60279 629 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 TFP02787 698 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 GAAP10253 952 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 SPI1P17947 270 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 S100A5P33763 92 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 CDKN2AP42771 156 aaKnown RBP20.41■□□□□ 0.86
CDX1-201ENST00000231656 RORCP51449 518 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 PPP5CP53041 499 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 RRADP55042 308 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.41■□□□□ 0.86
CDX1-201ENST00000231656 SLC35D3Q5M8T2 416 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 TMEM81Q6P7N7 255 aa20.41■□□□□ 0.86
CDX1-201ENST00000231656 BEST3Q8N1M1 668 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms