RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C TAF9Q05027 157 aa11.79□□□□□ -0.52
SPT8YLR055C TSR1Q07381 788 aaKnown RBP11.79□□□□□ -0.52
SPT8YLR055C CMS1Q07897 291 aaKnown RBP11.79□□□□□ -0.52
SPT8YLR055C PGK1P00560 416 aaKnown RBP11.79□□□□□ -0.52
SPT8YLR055C SEC14P24280 304 aaKnown RBP11.79□□□□□ -0.52
SPT8YLR055C NMD5P46970 1048 aa11.79□□□□□ -0.52
SPT8YLR055C SCS3P53012 380 aa11.79□□□□□ -0.52
SPT8YLR055C GUP1P53154 560 aa11.79□□□□□ -0.52
SPT8YLR055C SEC5P89102 971 aa11.79□□□□□ -0.52
SPT8YLR055C ULP1Q02724 621 aa11.79□□□□□ -0.52
SPT8YLR055C PHM6Q05637 104 aa11.79□□□□□ -0.52
SPT8YLR055C LCB5Q06147 687 aaKnown RBP11.79□□□□□ -0.52
SPT8YLR055C TCO89Q08921 799 aa11.79□□□□□ -0.52
SPT8YLR055C AIM41Q12032 185 aa11.79□□□□□ -0.52
SPT8YLR055C TY4A-HQ6Q5P6 413 aa11.79□□□□□ -0.52
SPT8YLR055C KTR2P33550 425 aa11.78□□□□□ -0.52
SPT8YLR055C HEK2P38199 381 aaKnown RBP RIP-Chip data11.78□□□□□ -0.52 RIP-Chip
SPT8YLR055C DIP5P53388 608 aa11.78□□□□□ -0.52
SPT8YLR055C PNP1Q05788 311 aa11.78□□□□□ -0.52
SPT8YLR055C YLR177WQ06251 628 aa11.78□□□□□ -0.52
SPT8YLR055C CRD1Q07560 283 aa11.78□□□□□ -0.52
SPT8YLR055C FRA1Q07825 749 aa11.78□□□□□ -0.52
SPT8YLR055C SPO21Q12411 609 aa11.78□□□□□ -0.52
SPT8YLR055C PAH1P32567 862 aa11.77□□□□□ -0.52
SPT8YLR055C GPD2P41911 440 aaKnown RBP11.77□□□□□ -0.52
SPT8YLR055C BRE2P43132 505 aa11.77□□□□□ -0.52
SPT8YLR055C YML119WQ03208 357 aa11.77□□□□□ -0.52
SPT8YLR055C NCA2Q12374 616 aa11.77□□□□□ -0.52
SPT8YLR055C YOR131CQ12486 218 aa11.77□□□□□ -0.52
SPT8YLR055C SEY1Q99287 776 aa11.77□□□□□ -0.52
SPT8YLR055C TRP2P00899 507 aaKnown RBP11.76□□□□□ -0.53
SPT8YLR055C SUP45P12385 437 aaKnown RBP11.76□□□□□ -0.53
SPT8YLR055C POX1P13711 748 aa11.76□□□□□ -0.53
SPT8YLR055C PRP4P20053 465 aaKnown RBP11.76□□□□□ -0.53
SPT8YLR055C TRK2P28584 889 aa11.76□□□□□ -0.53
SPT8YLR055C YBR062CP38239 180 aa11.76□□□□□ -0.53
SPT8YLR055C YJR107WP47145 328 aa11.76□□□□□ -0.53
SPT8YLR055C RIM8P53179 542 aa11.76□□□□□ -0.53
SPT8YLR055C CPR6P53691 371 aaKnown RBP11.76□□□□□ -0.53
SPT8YLR055C PGA2P53903 129 aa11.76□□□□□ -0.53
SPT8YLR055C GTR1Q00582 310 aa11.76□□□□□ -0.53
SPT8YLR055C YPL109CQ02981 657 aa11.76□□□□□ -0.53
SPT8YLR055C NOB1Q08444 459 aaKnown RBP11.76□□□□□ -0.53
SPT8YLR055C ADH4P10127 382 aa11.76□□□□□ -0.53
SPT8YLR055C CLN3P13365 580 aa11.76□□□□□ -0.53
SPT8YLR055C HMF1P40037 129 aaKnown RBP11.76□□□□□ -0.53
SPT8YLR055C SDS3P40505 327 aa11.76□□□□□ -0.53
SPT8YLR055C HXT8P40886 569 aa11.76□□□□□ -0.53
SPT8YLR055C RPS7BP48164 190 aaKnown RBP11.76□□□□□ -0.53
SPT8YLR055C NBP1P52919 319 aaPredicted RBP11.76□□□□□ -0.53
SPT8YLR055C SPC24Q04477 213 aa11.76□□□□□ -0.53
SPT8YLR055C SUT2Q12286 268 aa11.76□□□□□ -0.53
SPT8YLR055C RAD3P06839 778 aa11.75□□□□□ -0.53
SPT8YLR055C DBP1P24784 617 aaKnown RBP11.75□□□□□ -0.53
SPT8YLR055C NAM7P30771 971 aaKnown RBP11.75□□□□□ -0.53
SPT8YLR055C SUV3P32580 737 aa11.75□□□□□ -0.53
SPT8YLR055C TVP38P36164 337 aa11.75□□□□□ -0.53
SPT8YLR055C ATG36P46983 293 aa11.75□□□□□ -0.53
SPT8YLR055C TFB2Q02939 513 aa11.75□□□□□ -0.53
SPT8YLR055C YMR018WQ04364 514 aa11.75□□□□□ -0.53
SPT8YLR055C YLL058WQ12198 575 aa11.75□□□□□ -0.53
SPT8YLR055C SCP160P06105 1222 aaKnown RBP RIP-Chip data11.74□□□□□ -0.53not detected
SPT8YLR055C POL3P15436 1097 aa11.74□□□□□ -0.53
SPT8YLR055C YME1P32795 747 aa11.74□□□□□ -0.53
SPT8YLR055C TIM23P32897 222 aa11.74□□□□□ -0.53
SPT8YLR055C BLI1P35727 113 aa11.74□□□□□ -0.53
SPT8YLR055C LCP5P40079 357 aaPredicted RBP11.74□□□□□ -0.53
SPT8YLR055C SEC26P41810 973 aaKnown RBP11.74□□□□□ -0.53
SPT8YLR055C ROG3P43602 733 aa11.74□□□□□ -0.53
SPT8YLR055C PRY3P47033 881 aa11.74□□□□□ -0.53
SPT8YLR055C TMA22P47089 198 aaPredicted RBP11.74□□□□□ -0.53
SPT8YLR055C SYH1Q02875 849 aaKnown RBP11.74□□□□□ -0.53
SPT8YLR055C YMR187CQ03236 431 aa11.74□□□□□ -0.53
SPT8YLR055C GIR2Q03768 265 aaPredicted RBP11.74□□□□□ -0.53
SPT8YLR055C MAG2Q06436 670 aaKnown RBP11.74□□□□□ -0.53
SPT8YLR055C YDL057WQ07379 328 aa11.74□□□□□ -0.53
SPT8YLR055C SRV2P17555 526 aaKnown RBP11.74□□□□□ -0.53
SPT8YLR055C SPT5P27692 1063 aaKnown RBP11.74□□□□□ -0.53
SPT8YLR055C NIP1P32497 812 aaKnown RBP11.74□□□□□ -0.53
SPT8YLR055C BCS1P32839 456 aa11.74□□□□□ -0.53
SPT8YLR055C DEF1P35732 738 aaKnown RBP11.74□□□□□ -0.53
SPT8YLR055C PIH1P38768 344 aa11.74□□□□□ -0.53
SPT8YLR055C VPS62P53285 467 aa11.74□□□□□ -0.53
SPT8YLR055C JJJ1P53863 590 aa11.74□□□□□ -0.53
SPT8YLR055C SUB1P54000 292 aaKnown RBP11.74□□□□□ -0.53
SPT8YLR055C VPS16Q03308 798 aa11.74□□□□□ -0.53
SPT8YLR055C FAR8Q05040 523 aa11.74□□□□□ -0.53
SPT8YLR055C MED1Q12321 566 aa11.74□□□□□ -0.53
SPT8YLR055C PFK1P16861 987 aaKnown RBP11.73□□□□□ -0.53
SPT8YLR055C CDC48P25694 835 aaKnown RBP11.73□□□□□ -0.53
SPT8YLR055C BCH2P36122 765 aa11.73□□□□□ -0.53
SPT8YLR055C ECM2P38241 364 aaKnown RBP11.73□□□□□ -0.53
SPT8YLR055C KAP123P40069 1113 aaKnown RBP11.73□□□□□ -0.53
SPT8YLR055C UTP6Q02354 440 aaKnown RBP11.73□□□□□ -0.53
SPT8YLR055C TDA9Q04545 1251 aa11.73□□□□□ -0.53
SPT8YLR055C FAL1Q12099 399 aaKnown RBP11.73□□□□□ -0.53
SPT8YLR055C YLR462WO13556 202 aa11.72□□□□□ -0.53
SPT8YLR055C SRD1P09007 221 aa11.72□□□□□ -0.53
SPT8YLR055C YKL050CP35736 922 aa11.72□□□□□ -0.53
SPT8YLR055C YKL023WP36103 277 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 5,963 RNA–protein pairs in 25.8 ms