RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C OPY2Q06810 360 aa2.33□□□□□ -2.04
UFD4YKL010C KEL3Q08979 651 aaPredicted RBP2.33□□□□□ -2.04
UFD4YKL010C NBL1Q3E7Y6 73 aa2.33□□□□□ -2.04
UFD4YKL010C PET123P17558 318 aa2.33□□□□□ -2.04
UFD4YKL010C DAL7P21826 554 aa2.33□□□□□ -2.04
UFD4YKL010C YDJ1P25491 409 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C AFG2P32794 780 aa2.33□□□□□ -2.04
UFD4YKL010C YME1P32795 747 aa2.33□□□□□ -2.04
UFD4YKL010C PET10P36139 283 aa2.33□□□□□ -2.04
UFD4YKL010C PGM2P37012 569 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C CST26P38226 397 aa2.33□□□□□ -2.04
UFD4YKL010C FYV8P46949 817 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C JJJ2P46997 583 aa2.33□□□□□ -2.04
UFD4YKL010C CBK1P53894 756 aa2.33□□□□□ -2.04
UFD4YKL010C ADE12P80210 433 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C YMR102CQ03177 834 aa2.33□□□□□ -2.04
UFD4YKL010C YMR018WQ04364 514 aa2.33□□□□□ -2.04
UFD4YKL010C YPR078CQ06813 372 aa2.33□□□□□ -2.04
UFD4YKL010C NOT5Q12514 560 aaPredicted RBP2.33□□□□□ -2.04
UFD4YKL010C TOM70P07213 617 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C ILV2P07342 687 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C MTF2P10849 440 aa2.33□□□□□ -2.04
UFD4YKL010C PMR1P13586 950 aa2.33□□□□□ -2.04
UFD4YKL010C STI1P15705 589 aaKnown RBP RIP-Chip data2.33□□□□□ -2.04not detected
UFD4YKL010C TEC1P18412 486 aa2.33□□□□□ -2.04
UFD4YKL010C CDC42P19073 191 aa2.33□□□□□ -2.04
UFD4YKL010C RPC53P25441 422 aa2.33□□□□□ -2.04
UFD4YKL010C MRP4P32902 394 aa2.33□□□□□ -2.04
UFD4YKL010C MFT1P33441 392 aaKnown RBP2.33□□□□□ -2.04
UFD4YKL010C MKS1P34072 584 aa2.33□□□□□ -2.04
UFD4YKL010C ISW1P38144 1129 aa2.33□□□□□ -2.04
UFD4YKL010C SIP3P38717 1229 aa2.33□□□□□ -2.04
UFD4YKL010C OSH7P38755 437 aa2.33□□□□□ -2.04
UFD4YKL010C DAS1P47005 663 aa2.33□□□□□ -2.04
UFD4YKL010C ADY4Q05955 493 aa2.33□□□□□ -2.04
UFD4YKL010C SPH1Q06160 661 aa2.33□□□□□ -2.04
UFD4YKL010C FRA1Q07825 749 aa2.33□□□□□ -2.04
UFD4YKL010C CWC2Q12046 339 aaPredicted RBP2.33□□□□□ -2.04
UFD4YKL010C RRG1Q12167 365 aaPredicted RBP2.33□□□□□ -2.04
UFD4YKL010C GIN4Q12263 1142 aa2.33□□□□□ -2.04
UFD4YKL010C HIF1Q12373 385 aa2.33□□□□□ -2.04
UFD4YKL010C RKM4Q12504 494 aa2.33□□□□□ -2.04
UFD4YKL010C PRP9P19736 530 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C PER1P25625 357 aa2.32□□□□□ -2.04
UFD4YKL010C KEL1P38853 1164 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C RRP8P38961 392 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C AIM21P40563 679 aa2.32□□□□□ -2.04
UFD4YKL010C KAP114P53067 1004 aa2.32□□□□□ -2.04
UFD4YKL010C CNM67P53865 581 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C ARK1P53974 638 aa2.32□□□□□ -2.04
UFD4YKL010C VPS16Q03308 798 aa2.32□□□□□ -2.04
UFD4YKL010C ECM7Q06200 448 aa2.32□□□□□ -2.04
UFD4YKL010C TLG2Q08144 397 aa2.32□□□□□ -2.04
UFD4YKL010C NOB1Q08444 459 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C TAF10Q12030 206 aa2.32□□□□□ -2.04
UFD4YKL010C NCA2Q12374 616 aa2.32□□□□□ -2.04
UFD4YKL010C CDC19P00549 500 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C CDC37P06101 506 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C RAD53P22216 821 aa2.32□□□□□ -2.04
UFD4YKL010C PDC6P26263 563 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C PLC1P32383 869 aa2.32□□□□□ -2.04
UFD4YKL010C YKU70P32807 602 aa2.32□□□□□ -2.04
UFD4YKL010C SRP101P32916 621 aa2.32□□□□□ -2.04
UFD4YKL010C SAS3P34218 831 aa2.32□□□□□ -2.04
UFD4YKL010C END3P39013 349 aa2.32□□□□□ -2.04
UFD4YKL010C NOC2P39744 710 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C NPP2P39997 493 aa2.32□□□□□ -2.04
UFD4YKL010C MRX1P40050 688 aa2.32□□□□□ -2.04
UFD4YKL010C YNL320WP42840 284 aa2.32□□□□□ -2.04
UFD4YKL010C COS5P47187 383 aa2.32□□□□□ -2.04
UFD4YKL010C YGL140CP53120 1219 aa2.32□□□□□ -2.04
UFD4YKL010C RIM8P53179 542 aa2.32□□□□□ -2.04
UFD4YKL010C DIG1Q03063 452 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C ATG16Q03818 150 aa2.32□□□□□ -2.04
UFD4YKL010C SXM1Q04175 944 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C YDR222WQ04925 415 aa2.32□□□□□ -2.04
UFD4YKL010C SPO21Q12411 609 aa2.32□□□□□ -2.04
UFD4YKL010C CSR2Q12734 1121 aa2.32□□□□□ -2.04
UFD4YKL010C PGK1P00560 416 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C CDC8P00572 216 aa2.32□□□□□ -2.04
UFD4YKL010C PRP16P15938 1071 aaPredicted RBP2.32□□□□□ -2.04
UFD4YKL010C RPT3P33298 428 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C PGM1P33401 570 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C REI1P38344 393 aaPredicted RBP2.32□□□□□ -2.04
UFD4YKL010C CAJ1P39101 391 aa2.32□□□□□ -2.04
UFD4YKL010C UME1Q03010 460 aa2.32□□□□□ -2.04
UFD4YKL010C FMN1Q03778 218 aa2.32□□□□□ -2.04
UFD4YKL010C YLR287CQ05881 355 aa2.32□□□□□ -2.04
UFD4YKL010C PUF3Q07807 879 aaKnown RBP RIP-Chip data2.32□□□□□ -2.04not detected
UFD4YKL010C GPN2Q08726 347 aaPredicted RBP2.32□□□□□ -2.04
UFD4YKL010C AVL9Q12500 764 aa2.32□□□□□ -2.04
UFD4YKL010C ARD1P07347 238 aaPredicted RBP2.32□□□□□ -2.04
UFD4YKL010C NAM7P30771 971 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C BIO2P32451 375 aa2.32□□□□□ -2.04
UFD4YKL010C TMT1P32643 299 aa2.32□□□□□ -2.04
UFD4YKL010C ECM32P32644 1121 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C VPS45P38932 577 aa2.32□□□□□ -2.04
UFD4YKL010C SMC2P38989 1170 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C SMX2P40204 77 aaKnown RBP2.32□□□□□ -2.04
UFD4YKL010C ASG1P40467 964 aa2.32□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms