RNA–Protein interactions for RNA: YDR078C

SHU2, Transcript of Component of Shu complex (aka PCSS complex), yeast

Gene SHU2, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHU2	YDR078C	CEP3	P40969	608 aa		5.02	□□□□□ -1.61
SHU2	YDR078C	DUG1	P43616	481 aa	Known RBP	5.02	□□□□□ -1.61
SHU2	YDR078C	RSM24	Q03976	319 aa		5.02	□□□□□ -1.61
SHU2	YDR078C	YDR338C	Q05497	695 aa		5.02	□□□□□ -1.61
SHU2	YDR078C	CDA1	Q06702	301 aa		5.02	□□□□□ -1.61
SHU2	YDR078C	YDL177C	Q12257	170 aa		5.02	□□□□□ -1.61
SHU2	YDR078C	HSF1	P10961	833 aa		5.01	□□□□□ -1.61
SHU2	YDR078C	SAP190	P36123	1033 aa		5.01	□□□□□ -1.61
SHU2	YDR078C	SHR5	P41912	237 aa		5.01	□□□□□ -1.61
SHU2	YDR078C	RET2	P43621	546 aa		5.01	□□□□□ -1.61
SHU2	YDR078C	MNN11	P46985	422 aa	Known RBP	5.01	□□□□□ -1.61
SHU2	YDR078C	ENV11	P53246	860 aa		5.01	□□□□□ -1.61
SHU2	YDR078C	SND1	Q04007	877 aa		5.01	□□□□□ -1.61
SHU2	YDR078C	PLC1	P32383	869 aa		5	□□□□□ -1.61
SHU2	YDR078C	CCT5	P40413	562 aa	Known RBP	5	□□□□□ -1.61
SHU2	YDR078C	NIT2	P47016	307 aa		5	□□□□□ -1.61
SHU2	YDR078C	YGR153W	P48238	217 aa		5	□□□□□ -1.61
SHU2	YDR078C	UBC9	P50623	157 aa	Predicted RBP	5	□□□□□ -1.61
SHU2	YDR078C	NPY1	P53164	384 aa		5	□□□□□ -1.61
SHU2	YDR078C	YGR012W	P53206	393 aa		5	□□□□□ -1.61
SHU2	YDR078C	MRPL22	P53881	309 aa		5	□□□□□ -1.61
SHU2	YDR078C	YOR378W	Q08902	515 aa		5	□□□□□ -1.61
SHU2	YDR078C	THI21	Q08975	551 aa		5	□□□□□ -1.61
SHU2	YDR078C	SLX4	Q12098	748 aa		5	□□□□□ -1.61
SHU2	YDR078C	PRC1	P00729	532 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	ATP4	P05626	244 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	AEP2	P22136	580 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	RPD3	P32561	433 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	TFC4	P33339	1025 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	TDA3	P38758	523 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	ZRG8	P40021	1076 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	BNA2	P47125	453 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	PUS2	P53167	370 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	RIM8	P53179	542 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	TGL2	P54857	326 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	YOR022C	Q12204	715 aa		4.99	□□□□□ -1.61
SHU2	YDR078C	DID4	P36108	232 aa		4.98	□□□□□ -1.61
SHU2	YDR078C	YKR051W	P36142	418 aa		4.98	□□□□□ -1.61
SHU2	YDR078C	PEA2	P40091	420 aa		4.98	□□□□□ -1.61
SHU2	YDR078C	GPP2	P40106	250 aa	Known RBP	4.98	□□□□□ -1.61
SHU2	YDR078C	YIL108W	P40483	696 aa	Known RBP	4.98	□□□□□ -1.61
SHU2	YDR078C	FOL2	P51601	243 aa	Known RBP	4.98	□□□□□ -1.61
SHU2	YDR078C	ECM9	Q02202	377 aa		4.98	□□□□□ -1.61
SHU2	YDR078C	SSL1	Q04673	461 aa	Predicted RBP	4.98	□□□□□ -1.61
SHU2	YDR078C	CRR1	Q05790	422 aa		4.98	□□□□□ -1.61
SHU2	YDR078C	HAL9	Q12180	1030 aa		4.98	□□□□□ -1.61
SHU2	YDR078C	FBP1	P09201	348 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	ENA1	P13587	1091 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	PMC1	P38929	1173 aa	Predicted RBP	4.97	□□□□□ -1.61
SHU2	YDR078C	YFL052W	P43551	465 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	PSP2	P50109	593 aa	Known RBP	4.97	□□□□□ -1.61
SHU2	YDR078C	ZIP2	P53061	704 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	DUS1	P53759	423 aa	Known RBP	4.97	□□□□□ -1.61
SHU2	YDR078C	YNL034W	P53963	612 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	YNL018C	P53976	612 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	ENA2	Q01896	1091 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	RPN7	Q06103	429 aa	Known RBP	4.97	□□□□□ -1.61
SHU2	YDR078C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
SHU2	YDR078C	RMP1	Q12530	201 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	ENA5	Q12691	1091 aa		4.97	□□□□□ -1.61
SHU2	YDR078C	SPE1	P08432	466 aa		4.96	□□□□□ -1.62
SHU2	YDR078C	CMP2	P14747	604 aa		4.96	□□□□□ -1.62
SHU2	YDR078C	HIR1	P32479	840 aa		4.96	□□□□□ -1.62
SHU2	YDR078C	YKR018C	P36114	725 aa		4.96	□□□□□ -1.62
SHU2	YDR078C	MND2	P40577	368 aa		4.96	□□□□□ -1.62
SHU2	YDR078C	DAS1	P47005	663 aa		4.96	□□□□□ -1.62
SHU2	YDR078C	YLR149C	Q99296	730 aa		4.96	□□□□□ -1.62
SHU2	YDR078C	MPD2	Q99316	277 aa		4.96	□□□□□ -1.62
SHU2	YDR078C	GAL10	P04397	699 aa		4.95	□□□□□ -1.62
SHU2	YDR078C	SST2	P11972	698 aa	Known RBP	4.95	□□□□□ -1.62
SHU2	YDR078C	DAL3	P32459	195 aa		4.95	□□□□□ -1.62
SHU2	YDR078C	ATG19	P35193	415 aa		4.95	□□□□□ -1.62
SHU2	YDR078C	ETP1	P38748	585 aa	Known RBP	4.95	□□□□□ -1.62
SHU2	YDR078C	HXT6	P39003	570 aa	Known RBP	4.95	□□□□□ -1.62
SHU2	YDR078C	HXT7	P39004	570 aa		4.95	□□□□□ -1.62
SHU2	YDR078C	YPL277C	Q08989	487 aa		4.95	□□□□□ -1.62
SHU2	YDR078C	NYV1	Q12255	253 aa		4.95	□□□□□ -1.62
SHU2	YDR078C	Q0142	Q9ZZW4	58 aa		4.95	□□□□□ -1.62
SHU2	YDR078C	CYC1	P00044	109 aa	Predicted RBP	4.94	□□□□□ -1.62
SHU2	YDR078C	TOD6	P34219	525 aa		4.94	□□□□□ -1.62
SHU2	YDR078C	POA1	P38218	177 aa		4.94	□□□□□ -1.62
SHU2	YDR078C	CTF8	P38877	133 aa		4.94	□□□□□ -1.62
SHU2	YDR078C	PCL10	P53124	433 aa		4.94	□□□□□ -1.62
SHU2	YDR078C	PBP1	P53297	722 aa	Known RBP	4.94	□□□□□ -1.62
SHU2	YDR078C	HFI1	Q12060	488 aa		4.94	□□□□□ -1.62
SHU2	YDR078C	DCS2	Q12123	353 aa		4.94	□□□□□ -1.62
SHU2	YDR078C	APM4	Q99186	491 aa		4.94	□□□□□ -1.62
SHU2	YDR078C	SOD2	P00447	233 aa		4.93	□□□□□ -1.62
SHU2	YDR078C	KAR1	P11927	433 aa		4.93	□□□□□ -1.62
SHU2	YDR078C	PWP2	P25635	923 aa	Known RBP	4.93	□□□□□ -1.62
SHU2	YDR078C	HEM12	P32347	362 aa	Predicted RBP	4.93	□□□□□ -1.62
SHU2	YDR078C	OAF3	P36023	863 aa		4.93	□□□□□ -1.62
SHU2	YDR078C	MNN4	P36044	1178 aa		4.93	□□□□□ -1.62
SHU2	YDR078C	VPS24	P36095	224 aa	Known RBP	4.93	□□□□□ -1.62
SHU2	YDR078C	TRZ1	P36159	838 aa	Predicted RBP	4.93	□□□□□ -1.62
SHU2	YDR078C	BIT2	P38346	545 aa		4.93	□□□□□ -1.62
SHU2	YDR078C	YHR078W	P38799	552 aa		4.93	□□□□□ -1.62
SHU2	YDR078C	EMP65	P40085	556 aa		4.93	□□□□□ -1.62
SHU2	YDR078C	SDP1	P40479	209 aa		4.93	□□□□□ -1.62
SHU2	YDR078C	PTA1	Q01329	785 aa	Predicted RBP	4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms