RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	GIP4	P39732	760 aa		5.22	□□□□□ -1.57
NPL4	YBR170C	ALY2	P47029	1046 aa		5.22	□□□□□ -1.57
NPL4	YBR170C	ALT1	P52893	592 aa		5.22	□□□□□ -1.57
NPL4	YBR170C	SFB2	P53953	876 aa		5.22	□□□□□ -1.57
NPL4	YBR170C	ENA1	P13587	1091 aa		5.21	□□□□□ -1.58
NPL4	YBR170C	DAL7	P21826	554 aa		5.21	□□□□□ -1.58
NPL4	YBR170C	PTH2	P34222	208 aa		5.21	□□□□□ -1.58
NPL4	YBR170C	HSL7	P38274	827 aa		5.21	□□□□□ -1.58
NPL4	YBR170C	TDA3	P38758	523 aa		5.21	□□□□□ -1.58
NPL4	YBR170C	VID27	P40157	782 aa		5.21	□□□□□ -1.58
NPL4	YBR170C	UBC9	P50623	157 aa	Predicted RBP	5.21	□□□□□ -1.58
NPL4	YBR170C	ENA2	Q01896	1091 aa		5.21	□□□□□ -1.58
NPL4	YBR170C	ENA5	Q12691	1091 aa		5.21	□□□□□ -1.58
NPL4	YBR170C	YCL002C	P25565	263 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	YHL041W	P38730	149 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	HXT6	P39003	570 aa	Known RBP	5.2	□□□□□ -1.58
NPL4	YBR170C	HXT7	P39004	570 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	RLP7	P40693	322 aa	Known RBP	5.2	□□□□□ -1.58
NPL4	YBR170C	NOG2	P53742	486 aa	Known RBP	5.2	□□□□□ -1.58
NPL4	YBR170C	RCM1	P53972	490 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	LRS4	Q04087	347 aa	Known RBP	5.2	□□□□□ -1.58
NPL4	YBR170C	CDA2	Q06703	312 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	YBR182C-A	Q8TGU6	64 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	COQ4	O13525	335 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	RPS21A	P0C0V8	87 aa	Known RBP	5.2	□□□□□ -1.58
NPL4	YBR170C	APA1	P16550	321 aa	Known RBP	5.2	□□□□□ -1.58
NPL4	YBR170C	COX11	P19516	300 aa	Known RBP	5.2	□□□□□ -1.58
NPL4	YBR170C	KTR4	P38131	464 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	PIK1	P39104	1066 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	EMP65	P40085	556 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	RRT14	P40470	206 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	HIS6	P40545	261 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	SLD3	P53135	668 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	SKY1	Q03656	742 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	YPR196W	Q06595	470 aa		5.2	□□□□□ -1.58
NPL4	YBR170C	NBA1	Q08229	501 aa	Known RBP	5.2	□□□□□ -1.58
NPL4	YBR170C	RPS4A	P0CX35	261 aa	Known RBP	5.19	□□□□□ -1.58
NPL4	YBR170C	RPS4B	P0CX36	261 aa	Known RBP	5.19	□□□□□ -1.58
NPL4	YBR170C	ACE2	P21192	770 aa		5.19	□□□□□ -1.58
NPL4	YBR170C	EXO84	P38261	753 aa		5.19	□□□□□ -1.58
NPL4	YBR170C	TAF1	P46677	1066 aa		5.19	□□□□□ -1.58
NPL4	YBR170C	PAP2	P53632	584 aa	Known RBP	5.19	□□□□□ -1.58
NPL4	YBR170C	EAR1	Q03212	550 aa		5.19	□□□□□ -1.58
NPL4	YBR170C	PSR2	Q07949	397 aa		5.19	□□□□□ -1.58
NPL4	YBR170C	SER1	P33330	395 aa	Known RBP	5.18	□□□□□ -1.58
NPL4	YBR170C	TAN1	P53072	289 aa	Predicted RBP	5.18	□□□□□ -1.58
NPL4	YBR170C	BRE1	Q07457	700 aa	Known RBP	5.18	□□□□□ -1.58
NPL4	YBR170C	HFI1	Q12060	488 aa		5.18	□□□□□ -1.58
NPL4	YBR170C	YPR027C	Q12079	277 aa		5.18	□□□□□ -1.58
NPL4	YBR170C	APM4	Q99186	491 aa		5.18	□□□□□ -1.58
NPL4	YBR170C	DIF1	O13577	133 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	RFA1	P22336	621 aa	Known RBP	5.17	□□□□□ -1.58
NPL4	YBR170C	URA1	P28272	314 aa	Predicted RBP	5.17	□□□□□ -1.58
NPL4	YBR170C	RPC82	P32349	654 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	CCZ1	P38273	704 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	ENV11	P53246	860 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	GIS1	Q03833	894 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	ECM38	Q05902	660 aa	Predicted RBP	5.17	□□□□□ -1.58
NPL4	YBR170C	PEX15	Q08215	383 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	RPS21B	Q3E754	87 aa	Known RBP	5.17	□□□□□ -1.58
NPL4	YBR170C	MSS18	P08593	268 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	SAM35	P14693	329 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	DBF20	P32328	564 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	SSH4	P32343	579 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	RPN12	P32496	274 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	TSA1	P34760	196 aa	Known RBP	5.17	□□□□□ -1.58
NPL4	YBR170C	YKR051W	P36142	418 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	HFM1	P51979	1187 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	PTA1	Q01329	785 aa	Predicted RBP	5.17	□□□□□ -1.58
NPL4	YBR170C	YHM2	Q04013	314 aa		5.17	□□□□□ -1.58
NPL4	YBR170C	PFK1	P16861	987 aa	Known RBP	5.16	□□□□□ -1.58
NPL4	YBR170C	CYS3	P31373	394 aa	Known RBP	5.16	□□□□□ -1.58
NPL4	YBR170C	YKU70	P32807	602 aa		5.16	□□□□□ -1.58
NPL4	YBR170C	OAF3	P36023	863 aa		5.16	□□□□□ -1.58
NPL4	YBR170C	SHR5	P41912	237 aa		5.16	□□□□□ -1.58
NPL4	YBR170C	NPY1	P53164	384 aa		5.16	□□□□□ -1.58
NPL4	YBR170C	HDA1	P53973	706 aa		5.16	□□□□□ -1.58
NPL4	YBR170C	OSW2	Q12202	724 aa		5.16	□□□□□ -1.58
NPL4	YBR170C	NOT3	P06102	836 aa	Known RBP	5.15	□□□□□ -1.58
NPL4	YBR170C	SRO9	P25567	434 aa	Known RBP	5.15	□□□□□ -1.58
NPL4	YBR170C	ECM21	P38167	1117 aa	Known RBP	5.15	□□□□□ -1.58
NPL4	YBR170C	YHL012W	P38709	493 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	YAP1801	P38856	637 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	NOC2	P39744	710 aa	Known RBP	5.15	□□□□□ -1.58
NPL4	YBR170C	ACA1	P39970	489 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	VPS27	P40343	622 aa	Known RBP	5.15	□□□□□ -1.58
NPL4	YBR170C	SAP185	P40856	1058 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	CEP3	P40969	608 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	QRI7	P43122	407 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	YML131W	Q03102	365 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	CRR1	Q05790	422 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	XYL2	Q07993	356 aa		5.15	□□□□□ -1.58
NPL4	YBR170C	ADP1	P25371	1049 aa		5.14	□□□□□ -1.59
NPL4	YBR170C	SAP190	P36123	1033 aa		5.14	□□□□□ -1.59
NPL4	YBR170C	FAT1	P38225	669 aa		5.14	□□□□□ -1.59
NPL4	YBR170C	SET5	P38890	526 aa	Known RBP	5.14	□□□□□ -1.59
NPL4	YBR170C	CNM67	P53865	581 aa	Known RBP	5.14	□□□□□ -1.59
NPL4	YBR170C	RPN7	Q06103	429 aa	Known RBP	5.14	□□□□□ -1.59
NPL4	YBR170C	DCS2	Q12123	353 aa		5.14	□□□□□ -1.59
NPL4	YBR170C	SVS1	Q12254	260 aa		5.14	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms