RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NFKB1P19838 968 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 PSMA6P60900 246 aaKnown RBP1.97□□□□□ -2.09
VPS35-212ENST00000640313 GPLD1P80108 840 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 SETDB1Q15047 1291 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 HIF1AQ16665 826 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 ZNF648Q5T619 568 aaPredicted RBP1.97□□□□□ -2.09
VPS35-212ENST00000640313 SH3PXD2AQ5TCZ1 1133 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 IER5Q5VY09 327 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 NFXL1Q6ZNB6 911 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 AGGF1Q8N302 714 aaeCLIP1.97□□□□□ -2.09
VPS35-212ENST00000640313 SERBP1Q8NC51 408 aaKnown RBP eCLIP1.97□□□□□ -2.09
VPS35-212ENST00000640313 MTMR14Q8NCE2 650 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 SHKBP1Q8TBC3 707 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 PHACTR1Q9C0D0 580 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 ZNF358Q9NW07 568 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 CCDC39Q9UFE4 941 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 HCN4Q9Y3Q4 1203 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 NCANO14594 1321 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 PRRG2O14669 202 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 HOXA10P31260 410 aaPredicted RBP1.96□□□□□ -2.1
VPS35-212ENST00000640313 COL19A1Q14993 1142 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 ZNF124Q15973 351 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 MSMPQ1L6U9 139 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 TBCELQ5QJ74 424 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 DHX32Q7L7V1 743 aaKnown RBP1.96□□□□□ -2.1
VPS35-212ENST00000640313 FAM20CQ8IXL6 584 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 TNS4Q8IZW8 715 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 CACTIN-AS1Q8N1I8 211 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 UTP4Q969X6 686 aaKnown RBP1.96□□□□□ -2.1
VPS35-212ENST00000640313 MYRFLQ96LU7 910 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 SMG9Q9H0W8 520 aaKnown RBP1.96□□□□□ -2.1
VPS35-212ENST00000640313 MUC3BQ9H195 1237 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 PIM2Q9P1W9 311 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 ZFATQ9P243 1243 aa1.96□□□□□ -2.1
VPS35-212ENST00000640313 DMGDHQ9UI17 866 aaKnown RBP1.96□□□□□ -2.1
VPS35-212ENST00000640313 ANGEL1Q9UNK9 670 aaKnown RBP1.96□□□□□ -2.1
VPS35-212ENST00000640313 TM4SF5O14894 197 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 FARP2O94887 1054 aaPredicted RBP1.95□□□□□ -2.1
VPS35-212ENST00000640313 PAPLNO95428 1278 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 ZNF865P0CJ78 1059 aaPredicted RBP1.95□□□□□ -2.1
VPS35-212ENST00000640313 FOSL1P15407 271 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 ARID4AP29374 1257 aaPredicted RBP1.95□□□□□ -2.1
VPS35-212ENST00000640313 NRLP54845 237 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 IRF5Q13568 498 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 CPSF6Q16630 551 aaKnown RBP eCLIP1.95□□□□□ -2.1
VPS35-212ENST00000640313 LILRA6Q6PI73 481 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 VSIG10LQ86VR7 867 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 IL22RA1Q8N6P7 574 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 IFT43Q96FT9 208 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 GPBP1L1Q9HC44 474 aaPredicted RBP1.95□□□□□ -2.1
VPS35-212ENST00000640313 NOD1Q9Y239 953 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 CHMP3Q9Y3E7 222 aa1.95□□□□□ -2.1
VPS35-212ENST00000640313 WDR64B1ANS9 1081 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 B8ZZF3 427 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 TGFBR3LH3BV60 316 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 HOXD8P13378 290 aaPredicted RBP1.94□□□□□ -2.1
VPS35-212ENST00000640313 EPB42P16452 691 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 TARSP26639 723 aaKnown RBP1.94□□□□□ -2.1
VPS35-212ENST00000640313 GRNP28799 593 aaKnown RBP1.94□□□□□ -2.1
VPS35-212ENST00000640313 GTF2IP78347 998 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 PKN1Q16512 942 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 EML3Q32P44 896 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 PPP1R3FQ6ZSY5 799 aaPredicted RBP1.94□□□□□ -2.1
VPS35-212ENST00000640313 BEND4Q6ZU67 534 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 CILP2Q8IUL8 1156 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 TP53INP2Q8IXH6 220 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 ALDH16A1Q8IZ83 802 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 STAG2Q8N3U4 1231 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 GALNT11Q8NCW6 608 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 AGBL5Q8NDL9 886 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 BHLHE22Q8NFJ8 381 aaPredicted RBP1.94□□□□□ -2.1
VPS35-212ENST00000640313 GIMAP7Q8NHV1 300 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 PLD4Q96BZ4 506 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 SNRKQ9NRH2 765 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 ATG3Q9NT62 314 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 RAPGEFL1Q9UHV5 662 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 HIF3AQ9Y2N7 669 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 LEMD3Q9Y2U8 911 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 PPME1Q9Y570 386 aa1.94□□□□□ -2.1
VPS35-212ENST00000640313 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP1.94□□□□□ -2.1
VPS35-212ENST00000640313 CARMIL2Q6F5E8 1435 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 LOC102724428A0A0B4J2F2 783 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 M0R2N6 131 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 BIN1O00499 593 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 ZBTB7BO15156 539 aaPredicted RBP1.93□□□□□ -2.1
VPS35-212ENST00000640313 WISP1O95388 367 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 RARAP10276 462 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 BMP3P12645 472 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 EIF2AK2P19525 551 aaKnown RBP1.93□□□□□ -2.1
VPS35-212ENST00000640313 INPP5BP32019 993 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 CD68P34810 354 aaPredicted RBP1.93□□□□□ -2.1
VPS35-212ENST00000640313 SOX11P35716 441 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 SIK1P57059 783 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 MLLT1Q03111 559 aaPredicted RBP1.93□□□□□ -2.1
VPS35-212ENST00000640313 GDF6Q6KF10 455 aaPredicted RBP1.93□□□□□ -2.1
VPS35-212ENST00000640313 KIAA1211Q6ZU35 1233 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 HFE2Q6ZVN8 426 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 ACAD11Q709F0 780 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 GAS2L2Q8NHY3 880 aa1.93□□□□□ -2.1
VPS35-212ENST00000640313 TSPAN10Q9H1Z9 355 aaPredicted RBP1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms