RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 CCDC85AQ96PX6 553 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-214ENST00000621814 TTC12Q9H892 705 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-214ENST00000621814 KDM6AO15550 1401 aaPredicted RBP15.38■□□□□ 0.05
CCDC88A-214ENST00000621814 RPS6KB1P23443 525 aa15.38■□□□□ 0.05
CCDC88A-214ENST00000621814 TIMM10P62072 90 aa15.38■□□□□ 0.05
CCDC88A-214ENST00000621814 JAK2O60674 1132 aa15.38■□□□□ 0.05
CCDC88A-214ENST00000621814 TAF5LO75529 589 aa15.38■□□□□ 0.05
CCDC88A-214ENST00000621814 TMEM87AQ8NBN3 555 aa15.38■□□□□ 0.05
CCDC88A-214ENST00000621814 ZBTB3Q9H5J0 574 aa15.38■□□□□ 0.05
CCDC88A-214ENST00000621814 CKAP2LQ8IYA6 745 aa15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 TAOK2Q9UL54 1235 aa15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 GOLIM4O00461 696 aa15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 TOB2Q14106 344 aaPredicted RBP15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 CSPP1Q1MSJ5 1256 aa15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 TTC6Q86TZ1 520 aa15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 SPC24Q8NBT2 197 aa15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 DCAF5Q96JK2 942 aa15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 KRT85P78386 507 aa15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 ZNF594Q96JF6 807 aaPredicted RBP15.37■□□□□ 0.05
CCDC88A-214ENST00000621814 PRKCSHP14314 528 aaPredicted RBP15.36■□□□□ 0.05
CCDC88A-214ENST00000621814 TTLL7Q6ZT98 887 aa15.36■□□□□ 0.05
CCDC88A-214ENST00000621814 Q6ZUG5 572 aa15.36■□□□□ 0.05
CCDC88A-214ENST00000621814 NEK1Q96PY6 1258 aa15.36■□□□□ 0.05
CCDC88A-214ENST00000621814 FAM13BQ9NYF5 915 aa15.36■□□□□ 0.05
CCDC88A-214ENST00000621814 LMO7Q8WWI1 1683 aa15.36■□□□□ 0.05
CCDC88A-214ENST00000621814 ZNF500O60304 480 aaPredicted RBP15.36■□□□□ 0.05
CCDC88A-214ENST00000621814 A1BGP04217 495 aa15.36■□□□□ 0.05
CCDC88A-214ENST00000621814 C1orf167Q5SNV9 1468 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 LIG1P18858 919 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 KCNB2Q92953 911 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 COPRSQ9NQ92 184 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 MEGF6O75095 1541 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 LETM1O95202 739 aaPredicted RBP15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 TPM2P07951 284 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 RFX5P48382 616 aaPredicted RBP15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 ANKRD1Q15327 319 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 CHST3Q7LGC8 479 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 H3BQV1 296 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 ATP5JP18859 108 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 IFFO2Q5TF58 517 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 FAM184AQ8NB25 1140 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 BRF1Q92994 677 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 SPATA32Q96LK8 384 aa15.35■□□□□ 0.05
CCDC88A-214ENST00000621814 UQCRHLA0A096LP55 91 aa15.34■□□□□ 0.05
CCDC88A-214ENST00000621814 UQCRHP07919 91 aa15.34■□□□□ 0.05
CCDC88A-214ENST00000621814 CYP21A2P08686 494 aa15.34■□□□□ 0.05
CCDC88A-214ENST00000621814 KIAA2012Q0VF49 1180 aa15.34■□□□□ 0.05
CCDC88A-214ENST00000621814 TOM1L2Q6ZVM7 507 aa15.34■□□□□ 0.05
CCDC88A-214ENST00000621814 COL15A1P39059 1388 aa15.34■□□□□ 0.05
CCDC88A-214ENST00000621814 A0A0G2JLW4 131 aa15.33■□□□□ 0.05
CCDC88A-214ENST00000621814 PDCP20941 246 aa15.33■□□□□ 0.05
CCDC88A-214ENST00000621814 N4BP2Q86UW6 1770 aaPredicted RBP15.33■□□□□ 0.05
CCDC88A-214ENST00000621814 USP54Q70EL1 1684 aa15.33■□□□□ 0.04
CCDC88A-214ENST00000621814 CCT2P78371 535 aaKnown RBP15.33■□□□□ 0.04
CCDC88A-214ENST00000621814 MCMDC2Q4G0Z9 681 aa15.33■□□□□ 0.04
CCDC88A-214ENST00000621814 LRP10Q7Z4F1 713 aa15.33■□□□□ 0.04
CCDC88A-214ENST00000621814 BICD2Q8TD16 824 aa15.33■□□□□ 0.04
CCDC88A-214ENST00000621814 DACT1Q9NYF0 836 aa15.33■□□□□ 0.04
CCDC88A-214ENST00000621814 NBPF26B4DH59 902 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 KDM4AO75164 1064 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 LRRC24Q50LG9 513 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 NBPF14Q5TI25 921 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 NBPF10Q6P3W6 841 aaKnown RBP15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 NBPF15Q8N660 670 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 SNRKQ9NRH2 765 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 MED23Q9ULK4 1368 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 FKBP4Q02790 459 aaKnown RBP eCLIP15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 PLBD2Q8NHP8 589 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 RGPD5Q99666 1765 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 TMEM94Q12767 1356 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 NUP62CLQ9H1M0 184 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 STRN4Q9NRL3 753 aa15.32■□□□□ 0.04
CCDC88A-214ENST00000621814 AP5Z1O43299 807 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 CCDC192P0DO97 292 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 HMG20BQ9P0W2 317 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 SLIT3O75094 1523 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 GUCY1B3Q02153 619 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 UVSSAQ2YD98 709 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 LUZP1Q86V48 1076 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 TNMDQ9H2S6 317 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 OVOS2A0A0G2JMS6 1433 aa15.31■□□□□ 0.04
CCDC88A-214ENST00000621814 HAUS7Q99871 368 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 PRDM11Q9NQV5 511 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 ZNF609O15014 1411 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 MCM5P33992 734 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 APOBRQ0VD83 1088 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 MAP3K11Q16584 847 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 HSP90AB3PQ58FF7 597 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 PUS3Q9BZE2 481 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 NCOA5Q9HCD5 579 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 PAG1Q9NWQ8 432 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 KRT32Q14532 448 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 GORABQ5T7V8 394 aa15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 CWC25Q9NXE8 425 aaPredicted RBP15.3■□□□□ 0.04
CCDC88A-214ENST00000621814 RRP9O43818 475 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-214ENST00000621814 STOX1Q6ZVD7 989 aa15.29■□□□□ 0.04
CCDC88A-214ENST00000621814 FTOQ9C0B1 505 aaKnown RBP eCLIP15.29■□□□□ 0.043e-11■■■■■ 41.9
CCDC88A-214ENST00000621814 U3KPZ7 1027 aaPredicted RBP15.29■□□□□ 0.04
CCDC88A-214ENST00000621814 FOXO4P98177 505 aa15.29■□□□□ 0.04
CCDC88A-214ENST00000621814 SCRN1Q12765 414 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms