RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 LRRC7Q96NW7 1537 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 EPB41L2O43491 1005 aaKnown RBP12.17□□□□□ -0.46
LIG1-220ENST00000601091 HCLS1P14317 486 aaPredicted RBP12.17□□□□□ -0.46
LIG1-220ENST00000601091 IL17REQ8NFR9 667 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 CCDC34Q96HJ3 373 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 ZNF396Q96N95 335 aaPredicted RBP12.17□□□□□ -0.46
LIG1-220ENST00000601091 RIPOR2Q9Y4F9 1068 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 GRM8O00222 908 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 SGSM2O43147 1006 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 HOXB7P09629 217 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 SCP2P22307 547 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 EVA1CP58658 441 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 KIF2CQ99661 725 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 NAT10Q9H0A0 1025 aaKnown RBP12.17□□□□□ -0.46
LIG1-220ENST00000601091 TTC12Q9H892 705 aaPredicted RBP12.17□□□□□ -0.46
LIG1-220ENST00000601091 CALCOCO1Q9P1Z2 691 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 BIN2Q9UBW5 565 aaPredicted RBP12.17□□□□□ -0.46
LIG1-220ENST00000601091 ARHGEF40Q8TER5 1519 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 ADCY5O95622 1261 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 CAPN2P17655 700 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 LINS1Q8NG48 757 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 SSH3Q8TE77 659 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 F13A1P00488 732 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 CAMK4Q16566 473 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 DNAJC14Q6Y2X3 702 aaPredicted RBP12.16□□□□□ -0.46
LIG1-220ENST00000601091 PA2G4Q9UQ80 394 aaKnown RBP12.16□□□□□ -0.46
LIG1-220ENST00000601091 RBM8AQ9Y5S9 174 aaKnown RBP12.16□□□□□ -0.46
LIG1-220ENST00000601091 NBPF7P0C2Y1 421 aaPredicted RBP12.16□□□□□ -0.46
LIG1-220ENST00000601091 PRPF38AQ8NAV1 312 aaKnown RBP12.16□□□□□ -0.46
LIG1-220ENST00000601091 ANKRD24Q8TF21 1146 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 PPP1R9BQ96SB3 815 aa12.16□□□□□ -0.46
LIG1-220ENST00000601091 SYT1P21579 422 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 HSPA4P34932 840 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 NECAB1Q8N987 351 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 DDX11Q96FC9 970 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 NUCKS1Q9H1E3 243 aaKnown RBP12.15□□□□□ -0.46
LIG1-220ENST00000601091 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.15□□□□□ -0.462e-7■■■■■ 129.7
LIG1-220ENST00000601091 IRAK4Q9NWZ3 460 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 TMEM63CQ9P1W3 806 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 PPP1R1BQ9UD71 204 aaPredicted RBP12.15□□□□□ -0.46
LIG1-220ENST00000601091 ROBO2Q9HCK4 1378 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 A2ML1A8K2U0 1454 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 FBXW7Q969H0 707 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 MYOM1P52179 1685 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 RBM5P52756 815 aaKnown RBP eCLIP12.15□□□□□ -0.46
LIG1-220ENST00000601091 TRIM29Q14134 588 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 ZKSCAN8Q15776 578 aaPredicted RBP12.15□□□□□ -0.46
LIG1-220ENST00000601091 GIMAP6Q6P9H5 292 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 LRRC59Q96AG4 307 aaKnown RBP12.15□□□□□ -0.46
LIG1-220ENST00000601091 TFIP11Q9UBB9 837 aaKnown RBP12.15□□□□□ -0.46
LIG1-220ENST00000601091 STAP2Q9UGK3 403 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 PALD1Q9ULE6 856 aa12.15□□□□□ -0.46
LIG1-220ENST00000601091 NOL7Q9UMY1 257 aaKnown RBP12.15□□□□□ -0.46
LIG1-220ENST00000601091 AK9Q5TCS8 1911 aa12.15□□□□□ -0.47
LIG1-220ENST00000601091 CAMSAP1Q5T5Y3 1602 aa12.15□□□□□ -0.47
LIG1-220ENST00000601091 IBTKQ9P2D0 1353 aaPredicted RBP12.14□□□□□ -0.47
LIG1-220ENST00000601091 RAD50Q92878 1312 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 CCT2P78371 535 aaKnown RBP12.14□□□□□ -0.47
LIG1-220ENST00000601091 CWF19L2Q2TBE0 894 aaKnown RBP12.14□□□□□ -0.47
LIG1-220ENST00000601091 CCDC158Q5M9N0 1113 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 VPS53Q5VIR6 699 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 GPT2Q8TD30 523 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 LGR6Q9HBX8 967 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 HMG20BQ9P0W2 317 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 SNX14Q9Y5W7 946 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 USP6P35125 1406 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 ME1P48163 572 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 DNM1Q05193 864 aaKnown RBP12.14□□□□□ -0.47
LIG1-220ENST00000601091 ERBB3P21860 1342 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 IGSF1Q8N6C5 1336 aa12.14□□□□□ -0.47
LIG1-220ENST00000601091 A0A087WZG4 1122 aa12.13□□□□□ -0.47
LIG1-220ENST00000601091 PAX3P23760 479 aa12.13□□□□□ -0.47
LIG1-220ENST00000601091 ZNF280DQ6N043 979 aa12.13□□□□□ -0.47
LIG1-220ENST00000601091 CEP126Q9P2H0 1117 aa12.13□□□□□ -0.47
LIG1-220ENST00000601091 U3KPZ7 1027 aaPredicted RBP12.13□□□□□ -0.47
LIG1-220ENST00000601091 DYNC1I1O14576 645 aa12.13□□□□□ -0.47
LIG1-220ENST00000601091 TPD52L1Q16890 204 aaPredicted RBP12.13□□□□□ -0.47
LIG1-220ENST00000601091 SSH2Q76I76 1423 aa12.13□□□□□ -0.47
LIG1-220ENST00000601091 EIF4A1P60842 406 aaKnown RBP12.13□□□□□ -0.47
LIG1-220ENST00000601091 MROH2AA6NES4 1674 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 CPA1P15085 419 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 STK38Q15208 465 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 ANKRD13DQ6ZTN6 518 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 DDX19AQ9NUU7 478 aaKnown RBP12.12□□□□□ -0.47
LIG1-220ENST00000601091 CKAP2LQ8IYA6 745 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 TCEANC2Q96MN5 208 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 FKBP4Q02790 459 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIG1-220ENST00000601091 NFXL1Q6ZNB6 911 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 UBE3BQ7Z3V4 1068 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 KRT28Q7Z3Y7 464 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 ZCRB1Q8TBF4 217 aaKnown RBP12.12□□□□□ -0.47
LIG1-220ENST00000601091 NEK1Q96PY6 1258 aa12.12□□□□□ -0.47
LIG1-220ENST00000601091 RNMTO43148 476 aaKnown RBP12.11□□□□□ -0.47
LIG1-220ENST00000601091 IPO7O95373 1038 aaKnown RBP12.11□□□□□ -0.47
LIG1-220ENST00000601091 GCP02774 474 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 NMIQ13287 307 aaPredicted RBP12.11□□□□□ -0.47
LIG1-220ENST00000601091 CCDC57Q2TAC2 916 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 CREB3L3Q68CJ9 461 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 COPS6Q7L5N1 327 aa12.11□□□□□ -0.47
LIG1-220ENST00000601091 KDM4CQ9H3R0 1056 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms