RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PHACTR2O75167 634 aa23.49■■□□□ 1.35
UPF1-207ENST00000599848 DHX37Q8IY37 1157 aaKnown RBP23.49■■□□□ 1.35
UPF1-207ENST00000599848 CTNNBL1Q8WYA6 563 aaPredicted RBP23.49■■□□□ 1.35
UPF1-207ENST00000599848 SOS1Q07889 1333 aaPredicted RBP23.49■■□□□ 1.35
UPF1-207ENST00000599848 FERP16591 822 aa23.48■■□□□ 1.35
UPF1-207ENST00000599848 PARP10Q53GL7 1025 aa23.48■■□□□ 1.35
UPF1-207ENST00000599848 SYNCQ9H7C4 482 aa23.48■■□□□ 1.35
UPF1-207ENST00000599848 TMOD4Q9NZQ9 345 aa23.48■■□□□ 1.35
UPF1-207ENST00000599848 ADGRF5Q8IZF2 1346 aa23.48■■□□□ 1.35
UPF1-207ENST00000599848 SPC24Q8NBT2 197 aa23.48■■□□□ 1.35
UPF1-207ENST00000599848 DCAF5Q96JK2 942 aa23.48■■□□□ 1.35
UPF1-207ENST00000599848 ZNF518AQ6AHZ1 1483 aa23.48■■□□□ 1.35
UPF1-207ENST00000599848 SPDYE3A6NKU9 549 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 ATP5J2-PTCD1G3V325 749 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 ARHGEF6Q15052 776 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 PPM1EQ8WY54 764 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 SIRT1Q96EB6 747 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 PICK1Q9NRD5 415 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 TRPM2O94759 1503 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 RIMS2Q9UQ26 1411 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 CALML3P27482 149 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 IFIT1BQ5T764 474 aaKnown RBP23.47■■□□□ 1.35
UPF1-207ENST00000599848 RTL9Q8NET4 1388 aa23.47■■□□□ 1.35
UPF1-207ENST00000599848 RFX1P22670 979 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 NOP2P46087 812 aaKnown RBP23.46■■□□□ 1.35
UPF1-207ENST00000599848 FLAD1Q8NFF5 587 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 PRPHP41219 470 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 THUMPD2Q9BTF0 503 aaKnown RBP23.46■■□□□ 1.35
UPF1-207ENST00000599848 DDX19AQ9NUU7 478 aaKnown RBP23.46■■□□□ 1.35
UPF1-207ENST00000599848 LPXNO60711 386 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 SSH1Q8WYL5 1049 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 PUF60Q9UHX1 559 aaKnown RBP23.46■■□□□ 1.35
UPF1-207ENST00000599848 NOD1Q9Y239 953 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 PI4KAP2A4QPH2 592 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 SMC1AQ14683 1233 aaKnown RBP23.46■■□□□ 1.35
UPF1-207ENST00000599848 FMNL3Q8IVF7 1028 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 PI4KAP1Q8N8J0 262 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 DYDC1Q8WWB3 177 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 CCDC87Q9NVE4 849 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 IVNS1ABPQ9Y6Y0 642 aa23.46■■□□□ 1.35
UPF1-207ENST00000599848 CAVIN2O95810 425 aa23.45■■□□□ 1.34
UPF1-207ENST00000599848 TOP1P11387 765 aaKnown RBP23.45■■□□□ 1.34
UPF1-207ENST00000599848 EXOC1Q9NV70 894 aa23.45■■□□□ 1.34
UPF1-207ENST00000599848 USP8P40818 1118 aa23.45■■□□□ 1.34
UPF1-207ENST00000599848 KLHL10Q6JEL2 608 aa23.45■■□□□ 1.34
UPF1-207ENST00000599848 DKC1O60832 514 aaKnown RBP eCLIP23.45■■□□□ 1.34
UPF1-207ENST00000599848 UHRF1BP1Q6BDS2 1440 aa23.45■■□□□ 1.34
UPF1-207ENST00000599848 PUS7Q96PZ0 661 aaKnown RBP23.45■■□□□ 1.34
UPF1-207ENST00000599848 CRACR2AQ9BSW2 395 aa23.45■■□□□ 1.34
UPF1-207ENST00000599848 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.45■■□□□ 1.347e-8■■□□□ 12.6
UPF1-207ENST00000599848 MACROD2A1Z1Q3 448 aa23.44■■□□□ 1.34
UPF1-207ENST00000599848 PLS1Q14651 629 aa23.44■■□□□ 1.34
UPF1-207ENST00000599848 SLC4A4Q9Y6R1 1079 aa23.44■■□□□ 1.34
UPF1-207ENST00000599848 NEK1Q96PY6 1258 aa23.44■■□□□ 1.34
UPF1-207ENST00000599848 ORC3Q9UBD5 711 aaPredicted RBP23.44■■□□□ 1.34
UPF1-207ENST00000599848 TCIRG1Q13488 830 aa23.43■■□□□ 1.34
UPF1-207ENST00000599848 CNBD1Q8NA66 436 aa23.43■■□□□ 1.34
UPF1-207ENST00000599848 GPHNQ9NQX3 736 aaPredicted RBP23.43■■□□□ 1.34
UPF1-207ENST00000599848 A2MP01023 1474 aa23.43■■□□□ 1.34
UPF1-207ENST00000599848 NSFL1CQ9UNZ2 370 aaKnown RBP23.43■■□□□ 1.34
UPF1-207ENST00000599848 NKTRP30414 1462 aaKnown RBP23.42■■□□□ 1.34
UPF1-207ENST00000599848 ARHGAP45Q92619 1136 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 TCHPQ9BT92 498 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 LMAN1P49257 510 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 KSR2Q6VAB6 950 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 GLT8D2Q9H1C3 349 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 PLCH2O75038 1416 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 MAGEB6P1A0A0J9YX57 407 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 NEMFO60524 1076 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 LDHBP07195 334 aaKnown RBP23.42■■□□□ 1.34
UPF1-207ENST00000599848 RARSP54136 660 aaKnown RBP23.42■■□□□ 1.34
UPF1-207ENST00000599848 FILIP1Q7Z7B0 1213 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 EHBP1Q8NDI1 1231 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 XAGE3Q8WTP9 111 aa23.42■■□□□ 1.34
UPF1-207ENST00000599848 RRP36Q96EU6 259 aaKnown RBP23.42■■□□□ 1.34
UPF1-207ENST00000599848 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.42■■□□□ 1.34
UPF1-207ENST00000599848 FSD2A1L4K1 749 aa23.41■■□□□ 1.34
UPF1-207ENST00000599848 PRKCSHP14314 528 aaPredicted RBP23.41■■□□□ 1.34
UPF1-207ENST00000599848 RBM25P49756 843 aaKnown RBP23.41■■□□□ 1.34
UPF1-207ENST00000599848 NUP88Q99567 741 aaPredicted RBP23.41■■□□□ 1.34
UPF1-207ENST00000599848 ASXL2Q76L83 1435 aa23.41■■□□□ 1.34
UPF1-207ENST00000599848 FLT4P35916 1363 aa23.41■■□□□ 1.34
UPF1-207ENST00000599848 MRPS9P82933 396 aaKnown RBP23.41■■□□□ 1.34
UPF1-207ENST00000599848 GOLGA6L9A6NEM1 432 aa23.41■■□□□ 1.34
UPF1-207ENST00000599848 SPAG1Q07617 926 aa23.41■■□□□ 1.34
UPF1-207ENST00000599848 F6X3S4 739 aa23.41■■□□□ 1.34
UPF1-207ENST00000599848 ZBTB43O43298 467 aa23.41■■□□□ 1.34
UPF1-207ENST00000599848 SLC5A4Q9NY91 659 aa23.41■■□□□ 1.34
UPF1-207ENST00000599848 MAP2K1Q02750 393 aaPredicted RBP23.4■■□□□ 1.34
UPF1-207ENST00000599848 PICALMQ13492 652 aa23.4■■□□□ 1.34
UPF1-207ENST00000599848 ZSCAN16Q9H4T2 348 aaPredicted RBP23.4■■□□□ 1.34
UPF1-207ENST00000599848 F8W031 263 aaPredicted RBP23.4■■□□□ 1.34
UPF1-207ENST00000599848 BBXQ8WY36 941 aaPredicted RBP23.4■■□□□ 1.34
UPF1-207ENST00000599848 CCDC102BQ68D86 513 aa23.4■■□□□ 1.34
UPF1-207ENST00000599848 SLC26A6Q9BXS9 759 aa23.4■■□□□ 1.34
UPF1-207ENST00000599848 GNA11P29992 359 aa23.4■■□□□ 1.34
UPF1-207ENST00000599848 IFFO1Q0D2I5 559 aa23.4■■□□□ 1.34
UPF1-207ENST00000599848 CCNL1Q9UK58 526 aaPredicted RBP23.4■■□□□ 1.34
UPF1-207ENST00000599848 ZBTB24O43167 697 aaPredicted RBP23.39■■□□□ 1.34
UPF1-207ENST00000599848 RTN1Q16799 776 aa23.39■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms