RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 KDM3BQ7LBC6 1761 aa13.48□□□□□ -0.25
SRP54-213ENST00000556994 U2AF2P26368 475 aaKnown RBP eCLIP13.48□□□□□ -0.251e-7■■■■■ 102.2
SRP54-213ENST00000556994 PLEKHO1Q53GL0 409 aaPredicted RBP13.48□□□□□ -0.25
SRP54-213ENST00000556994 CHMP4AQ9BY43 222 aa13.48□□□□□ -0.25
SRP54-213ENST00000556994 LRRC2Q9BYS8 371 aa13.48□□□□□ -0.25
SRP54-213ENST00000556994 CLSTN2Q9H4D0 955 aa13.48□□□□□ -0.25
SRP54-213ENST00000556994 ZNF165P49910 485 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 ZNF75DP51815 510 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 C1orf141Q5JVX7 400 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 CCDC129Q6ZRS4 1044 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 LINS1Q8NG48 757 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 PHF8Q9UPP1 1060 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 MED1Q15648 1581 aaPredicted RBP13.47□□□□□ -0.25
SRP54-213ENST00000556994 NPHP3Q7Z494 1330 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 LTN1O94822 1766 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 RGPD2P0DJD1 1756 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 PPFIA3O75145 1194 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 TAF5LO75529 589 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 IGKV5-2P06315 115 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 MYL6BP14649 208 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 ZSCAN25Q6NSZ9 544 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 BRF1Q92994 677 aa13.47□□□□□ -0.25
SRP54-213ENST00000556994 SEC62Q99442 399 aaKnown RBP13.47□□□□□ -0.25
SRP54-213ENST00000556994 DDX19AQ9NUU7 478 aaKnown RBP13.47□□□□□ -0.25
SRP54-213ENST00000556994 A0A087WWV3 80 aa13.46□□□□□ -0.25
SRP54-213ENST00000556994 HSP90B1P14625 803 aaKnown RBP13.46□□□□□ -0.25
SRP54-213ENST00000556994 TRHP20396 242 aaPredicted RBP13.46□□□□□ -0.25
SRP54-213ENST00000556994 EPHA10Q5JZY3 1008 aa13.46□□□□□ -0.25
SRP54-213ENST00000556994 Q6ZUG5 572 aa13.46□□□□□ -0.25
SRP54-213ENST00000556994 RIC3Q7Z5B4 369 aa13.46□□□□□ -0.25
SRP54-213ENST00000556994 PLA2G4DQ86XP0 818 aa13.46□□□□□ -0.25
SRP54-213ENST00000556994 KLHL34Q8N239 644 aa13.46□□□□□ -0.25
SRP54-213ENST00000556994 CCDC9Q9Y3X0 531 aaKnown RBP13.46□□□□□ -0.25
SRP54-213ENST00000556994 COL15A1P39059 1388 aa13.46□□□□□ -0.25
SRP54-213ENST00000556994 MED23Q9ULK4 1368 aa13.46□□□□□ -0.25
SRP54-213ENST00000556994 PXDNQ92626 1479 aa13.46□□□□□ -0.26
SRP54-213ENST00000556994 NAA30Q147X3 362 aaPredicted RBP13.46□□□□□ -0.26
SRP54-213ENST00000556994 CCDC144BQ3MJ40 725 aa13.46□□□□□ -0.26
SRP54-213ENST00000556994 CCDC144CPQ8IYA2 1237 aa13.46□□□□□ -0.26
SRP54-213ENST00000556994 SNRKQ9NRH2 765 aa13.46□□□□□ -0.26
SRP54-213ENST00000556994 CLIP2Q9UDT6 1046 aa13.46□□□□□ -0.26
SRP54-213ENST00000556994 H3BQV1 296 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 DMTNQ08495 405 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 SLC39A6Q13433 755 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 IFFO2Q5TF58 517 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 CACTINQ8WUQ7 758 aaKnown RBP13.45□□□□□ -0.26
SRP54-213ENST00000556994 ANKRD7Q92527 254 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 NEK1Q96PY6 1258 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 FTOQ9C0B1 505 aaKnown RBP eCLIP13.45□□□□□ -0.26
SRP54-213ENST00000556994 CTIFO43310 598 aaKnown RBP13.45□□□□□ -0.26
SRP54-213ENST00000556994 TNNT1P13805 278 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 PIP4K2AP48426 406 aaPredicted RBP13.45□□□□□ -0.26
SRP54-213ENST00000556994 PSME1Q06323 249 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 RESTQ13127 1097 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 ARID5BQ14865 1188 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 RBM43Q6ZSC3 357 aaKnown RBP13.45□□□□□ -0.26
SRP54-213ENST00000556994 TDRD7Q8NHU6 1098 aaKnown RBP13.45□□□□□ -0.26
SRP54-213ENST00000556994 GTF3C6Q969F1 213 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 HDAC5Q9UQL6 1122 aa13.45□□□□□ -0.26
SRP54-213ENST00000556994 PDIA6Q15084 440 aa13.44□□□□□ -0.26
SRP54-213ENST00000556994 DNAJC2Q99543 621 aaKnown RBP13.44□□□□□ -0.26
SRP54-213ENST00000556994 ALDH8A1Q9H2A2 487 aaPredicted RBP13.44□□□□□ -0.26
SRP54-213ENST00000556994 CHD2O14647 1828 aaKnown RBP13.44□□□□□ -0.26
SRP54-213ENST00000556994 ANKARQ7Z5J8 1434 aa13.44□□□□□ -0.26
SRP54-213ENST00000556994 IGSF3O75054 1194 aa13.44□□□□□ -0.26
SRP54-213ENST00000556994 DDX58O95786 925 aaKnown RBP13.44□□□□□ -0.26
SRP54-213ENST00000556994 PDIA4P13667 645 aaKnown RBP13.44□□□□□ -0.26
SRP54-213ENST00000556994 NCBP1Q09161 790 aaKnown RBP13.44□□□□□ -0.26
SRP54-213ENST00000556994 ESCO1Q5FWF5 840 aa13.44□□□□□ -0.26
SRP54-213ENST00000556994 LMOD2Q6P5Q4 547 aa13.44□□□□□ -0.26
SRP54-213ENST00000556994 C11orf57Q6ZUT1 292 aaPredicted RBP13.44□□□□□ -0.26
SRP54-213ENST00000556994 ZNF592Q92610 1267 aa13.44□□□□□ -0.26
SRP54-213ENST00000556994 DBNLQ9UJU6 430 aaKnown RBP13.44□□□□□ -0.26
SRP54-213ENST00000556994 TPD52L1Q16890 204 aaPredicted RBP13.43□□□□□ -0.26
SRP54-213ENST00000556994 SLFNL1Q499Z3 407 aa13.43□□□□□ -0.26
SRP54-213ENST00000556994 MYD88Q99836 296 aa13.43□□□□□ -0.26
SRP54-213ENST00000556994 DDX21Q9NR30 783 aaKnown RBP eCLIP13.43□□□□□ -0.26
SRP54-213ENST00000556994 HMG20BQ9P0W2 317 aa13.43□□□□□ -0.26
SRP54-213ENST00000556994 UTYO14607 1347 aa13.43□□□□□ -0.26
SRP54-213ENST00000556994 CYP21A2P08686 494 aa13.42□□□□□ -0.26
SRP54-213ENST00000556994 FGD1P98174 961 aa13.42□□□□□ -0.26
SRP54-213ENST00000556994 SCRN1Q12765 414 aa13.42□□□□□ -0.26
SRP54-213ENST00000556994 TFCP2Q12800 502 aa13.42□□□□□ -0.26
SRP54-213ENST00000556994 TSGA10IPQ3SY00 556 aa13.42□□□□□ -0.26
SRP54-213ENST00000556994 AMOTQ4VCS5 1084 aa13.42□□□□□ -0.26
SRP54-213ENST00000556994 THEMISQ8N1K5 641 aaPredicted RBP13.42□□□□□ -0.26
SRP54-213ENST00000556994 ERCC4Q92889 916 aaPredicted RBP13.42□□□□□ -0.26
SRP54-213ENST00000556994 FBXW7Q969H0 707 aa13.42□□□□□ -0.26
SRP54-213ENST00000556994 NEURL1BA8MQ27 555 aa13.42□□□□□ -0.26
SRP54-213ENST00000556994 USP27XA6NNY8 438 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 USPL1Q5W0Q7 1092 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 DDX46Q7L014 1031 aaKnown RBP13.41□□□□□ -0.26
SRP54-213ENST00000556994 COPS6Q7L5N1 327 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 XAGE3Q8WTP9 111 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 USP16Q9Y5T5 823 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 HEG1Q9ULI3 1381 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 GOLGA6L19H0YKK7 550 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 GCKRQ14397 625 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 IQCB1Q15051 598 aa13.41□□□□□ -0.26
SRP54-213ENST00000556994 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms