RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 GOLGA6L4A6NEF3 574 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 SLC27A2O14975 620 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 KDM6AO15550 1401 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-215ENST00000552823 IDH1O75874 414 aaKnown RBP6.68□□□□□ -1.34
LIMA1-215ENST00000552823 SLC4A8Q2Y0W8 1093 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 OTUD7BQ6GQQ9 843 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 BRF1Q92994 677 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 ZNF830Q96NB3 372 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-215ENST00000552823 NCOA5Q9HCD5 579 aaKnown RBP6.68□□□□□ -1.34
LIMA1-215ENST00000552823 CWC22Q9HCG8 908 aaKnown RBP6.68□□□□□ -1.34
LIMA1-215ENST00000552823 TPCN1Q9ULQ1 816 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 JAG2Q9Y219 1238 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 A0A1B0GUL7 405 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 TAF5LO75529 589 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 RXRAP19793 462 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 METTL24Q5JXM2 366 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 TTC39AQ5SRH9 613 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 GIMAP6Q6P9H5 292 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 CCDC144CPQ8IYA2 1237 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 CCDC82Q8N4S0 544 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 PLBD2Q8NHP8 589 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 NWD1Q149M9 1564 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 A0A087WWV3 80 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 EXOC5O00471 708 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 NPHP1O15259 732 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 STX6O43752 255 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 LDHAL6AQ6ZMR3 332 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 KIF6Q6ZMV9 814 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 DNAJC5Q9H3Z4 198 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 ZBTB1Q9Y2K1 713 aa6.68□□□□□ -1.34
LIMA1-215ENST00000552823 GOLGB1Q14789 3259 aaKnown RBP6.68□□□□□ -1.34
LIMA1-215ENST00000552823 H3BQV1 296 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 GTF2E1P29083 439 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-215ENST00000552823 KLHL40Q2TBA0 621 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 IFFO2Q5TF58 517 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 CKAP2LQ8IYA6 745 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 APOBRQ0VD83 1088 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 RRP12Q5JTH9 1297 aaKnown RBP6.67□□□□□ -1.34
LIMA1-215ENST00000552823 Q6ZUG5 572 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 FAM184AQ8NB25 1140 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 KDM4FA0A1W2PPD8 638 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 SCARF1Q14162 830 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 ERCC4Q92889 916 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-215ENST00000552823 INCENPQ9NQS7 918 aa6.67□□□□□ -1.34
LIMA1-215ENST00000552823 TTC41PQ6P2S7 1318 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 WDR17Q8IZU2 1322 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 FSD2A1L4K1 749 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 BRD1O95696 1058 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 IFIT5Q13325 482 aaKnown RBP6.66□□□□□ -1.34
LIMA1-215ENST00000552823 RNF20Q5VTR2 975 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 CDC37L1Q7L3B6 337 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 GJB4Q9NTQ9 266 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 WDR33Q9C0J8 1336 aaKnown RBP6.66□□□□□ -1.34
LIMA1-215ENST00000552823 KCNQ2O43526 872 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 ZAP70P43403 619 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 MCM2P49736 904 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 SPC24Q8NBT2 197 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 FTOQ9C0B1 505 aaKnown RBP eCLIP6.66□□□□□ -1.34
LIMA1-215ENST00000552823 GREM2Q9H772 168 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 PAG1Q9NWQ8 432 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 MTMR7Q9Y216 660 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-215ENST00000552823 PCDH11XQ9BZA7 1347 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 PCDH11YQ9BZA8 1340 aa6.66□□□□□ -1.34
LIMA1-215ENST00000552823 WTIPA6NIX2 430 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-215ENST00000552823 EYA2O00167 538 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 STARD3NLO95772 234 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 ZSCAN22P10073 491 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-215ENST00000552823 ATP2B1P20020 1258 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 BICD2Q8TD16 824 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 NEK1Q96PY6 1258 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 SEC31BQ9NQW1 1179 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 DENND2AQ9ULE3 1009 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 ERBB4Q15303 1308 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 MST1RQ04912 1400 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 NALCNQ8IZF0 1738 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 CYP21A2P08686 494 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 ATP6V1AP38606 617 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 RFX5P48382 616 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-215ENST00000552823 ANAPC15P60006 121 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 FOXO4P98177 505 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 NECTIN1Q15223 517 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 CCDC158Q5M9N0 1113 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 XAGE2Q96GT9 111 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 ATG3Q9NT62 314 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 USP25Q9UHP3 1055 aa6.65□□□□□ -1.34
LIMA1-215ENST00000552823 ESPNB1AK53 854 aa6.65□□□□□ -1.35
LIMA1-215ENST00000552823 IRS4O14654 1257 aaPredicted RBP6.65□□□□□ -1.35
LIMA1-215ENST00000552823 ITGA6P23229 1130 aa6.65□□□□□ -1.35
LIMA1-215ENST00000552823 MTX1Q13505 466 aa6.65□□□□□ -1.35
LIMA1-215ENST00000552823 DNTTIP2Q5QJE6 756 aaKnown RBP6.65□□□□□ -1.35
LIMA1-215ENST00000552823 DZIP3Q86Y13 1208 aaKnown RBP6.65□□□□□ -1.35
LIMA1-215ENST00000552823 C17orf53Q8N3J3 647 aaPredicted RBP6.65□□□□□ -1.35
LIMA1-215ENST00000552823 PIBF1Q8WXW3 757 aa6.65□□□□□ -1.35
LIMA1-215ENST00000552823 COPRSQ9NQ92 184 aa6.65□□□□□ -1.35
LIMA1-215ENST00000552823 ABCF2Q9UG63 623 aa6.65□□□□□ -1.35
LIMA1-215ENST00000552823 HEG1Q9ULI3 1381 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 F13A1P00488 732 aa6.64□□□□□ -1.35
LIMA1-215ENST00000552823 CYP2E1P05181 493 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-215ENST00000552823 PSMA5P28066 241 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms