RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 TCIRG1Q13488 830 aa20.18■□□□□ 0.82
RTN3-211ENST00000542238 TNIP1Q15025 636 aa20.18■□□□□ 0.82
RTN3-211ENST00000542238 CST9Q5W186 159 aa20.18■□□□□ 0.82
RTN3-211ENST00000542238 CIAPIN1Q6FI81 312 aa20.18■□□□□ 0.82
RTN3-211ENST00000542238 GPR101Q96P66 508 aaPredicted RBP20.18■□□□□ 0.82
RTN3-211ENST00000542238 BCL2L13Q9BXK5 485 aa20.18■□□□□ 0.82
RTN3-211ENST00000542238 TLL2Q9Y6L7 1015 aa20.18■□□□□ 0.82
RTN3-211ENST00000542238 THSD7BQ9C0I4 1608 aa20.17■□□□□ 0.82
RTN3-211ENST00000542238 GMPSP49915 693 aaPredicted RBP20.17■□□□□ 0.82
RTN3-211ENST00000542238 KIAA2012Q0VF49 1180 aa20.17■□□□□ 0.82
RTN3-211ENST00000542238 GRAPQ13588 217 aa20.17■□□□□ 0.82
RTN3-211ENST00000542238 CYP4F22Q6NT55 531 aa20.17■□□□□ 0.82
RTN3-211ENST00000542238 TMC4Q7Z404 712 aa20.17■□□□□ 0.82
RTN3-211ENST00000542238 GRAPLQ8TC17 118 aaPredicted RBP20.17■□□□□ 0.82
RTN3-211ENST00000542238 CDHR2Q9BYE9 1310 aa20.17■□□□□ 0.82
RTN3-211ENST00000542238 TAF1P21675 1872 aa20.16■□□□□ 0.82
RTN3-211ENST00000542238 NEUROD2Q15784 382 aa20.16■□□□□ 0.82
RTN3-211ENST00000542238 RAD17O75943 681 aa20.15■□□□□ 0.82
RTN3-211ENST00000542238 LAS1LQ9Y4W2 734 aaKnown RBP20.15■□□□□ 0.82
RTN3-211ENST00000542238 CELF2O95319 508 aaKnown RBP20.14■□□□□ 0.81
RTN3-211ENST00000542238 MAP2K2P36507 400 aa20.14■□□□□ 0.81
RTN3-211ENST00000542238 ZC3H15Q8WU90 426 aaKnown RBP20.14■□□□□ 0.81
RTN3-211ENST00000542238 CHL1O00533 1208 aa20.13■□□□□ 0.81
RTN3-211ENST00000542238 ABHD8Q96I13 439 aa20.13■□□□□ 0.81
RTN3-211ENST00000542238 PGAP2Q9UHJ9 254 aa20.13■□□□□ 0.81
RTN3-211ENST00000542238 H7C1D1 291 aa20.12■□□□□ 0.81
RTN3-211ENST00000542238 SAPCD2Q86UD0 394 aa20.12■□□□□ 0.81
RTN3-211ENST00000542238 CCDC146Q8IYE0 955 aa20.12■□□□□ 0.81
RTN3-211ENST00000542238 PLBD2Q8NHP8 589 aa20.12■□□□□ 0.81
RTN3-211ENST00000542238 GLIS2Q9BZE0 524 aaPredicted RBP20.12■□□□□ 0.81
RTN3-211ENST00000542238 CHPF2Q9P2E5 772 aa20.12■□□□□ 0.81
RTN3-211ENST00000542238 CNOT7Q9UIV1 285 aaKnown RBP20.12■□□□□ 0.81
RTN3-211ENST00000542238 DDX60Q8IY21 1712 aaKnown RBP20.11■□□□□ 0.81
RTN3-211ENST00000542238 KRT24Q2M2I5 525 aa20.11■□□□□ 0.81
RTN3-211ENST00000542238 HDGFL1Q5TGJ6 251 aa20.11■□□□□ 0.81
RTN3-211ENST00000542238 ANKRD13DQ6ZTN6 518 aa20.11■□□□□ 0.81
RTN3-211ENST00000542238 CDC37L1Q7L3B6 337 aa20.11■□□□□ 0.81
RTN3-211ENST00000542238 HHIPL1Q96JK4 782 aa20.11■□□□□ 0.81
RTN3-211ENST00000542238 ZNF408Q9H9D4 720 aa20.11■□□□□ 0.81
RTN3-211ENST00000542238 LRRC37AA6NMS7 1700 aa20.1■□□□□ 0.81
RTN3-211ENST00000542238 AOC2O75106 756 aa20.1■□□□□ 0.81
RTN3-211ENST00000542238 HOXB7P09629 217 aa20.1■□□□□ 0.81
RTN3-211ENST00000542238 WASHC4Q2M389 1173 aa20.1■□□□□ 0.81
RTN3-211ENST00000542238 RUNDC1Q96C34 613 aa20.1■□□□□ 0.81
RTN3-211ENST00000542238 DBF4Q9UBU7 674 aaPredicted RBP20.1■□□□□ 0.81
RTN3-211ENST00000542238 MYBBP1AQ9BQG0 1328 aaKnown RBP20.09■□□□□ 0.81
RTN3-211ENST00000542238 CA12O43570 354 aa20.09■□□□□ 0.81
RTN3-211ENST00000542238 HIRAP54198 1017 aaPredicted RBP20.09■□□□□ 0.81
RTN3-211ENST00000542238 WDR43Q15061 677 aaKnown RBP eCLIP20.09■□□□□ 0.81
RTN3-211ENST00000542238 ZNF428Q96B54 188 aa20.09■□□□□ 0.81
RTN3-211ENST00000542238 NSFL1CQ9UNZ2 370 aaKnown RBP20.09■□□□□ 0.81
RTN3-211ENST00000542238 DUOX1Q9NRD9 1551 aa20.08■□□□□ 0.81
RTN3-211ENST00000542238 YDJCA8MPS7 323 aa20.08■□□□□ 0.81
RTN3-211ENST00000542238 MICALL2Q8IY33 904 aa20.08■□□□□ 0.81
RTN3-211ENST00000542238 TRPM4Q8TD43 1214 aa20.08■□□□□ 0.81
RTN3-211ENST00000542238 FAM89AQ96GI7 184 aa20.08■□□□□ 0.81
RTN3-211ENST00000542238 HYPKQ9NX55 129 aa20.08■□□□□ 0.81
RTN3-211ENST00000542238 ATP5J2-PTCD1G3V325 749 aa20.07■□□□□ 0.8
RTN3-211ENST00000542238 C6orf229H3BNL8 230 aa20.07■□□□□ 0.8
RTN3-211ENST00000542238 SF3B3Q15393 1217 aaKnown RBP20.07■□□□□ 0.8
RTN3-211ENST00000542238 DPF2Q92785 391 aa20.07■□□□□ 0.8
RTN3-211ENST00000542238 ISCA1Q9BUE6 129 aa20.07■□□□□ 0.8
RTN3-211ENST00000542238 TRIM35Q9UPQ4 493 aa20.07■□□□□ 0.8
RTN3-211ENST00000542238 BRPF1P55201 1214 aaPredicted RBP20.06■□□□□ 0.8
RTN3-211ENST00000542238 CELF1Q92879 486 aaKnown RBP20.06■□□□□ 0.8
RTN3-211ENST00000542238 EYA3Q99504 573 aa20.06■□□□□ 0.8
RTN3-211ENST00000542238 TSKSQ9UJT2 592 aa20.06■□□□□ 0.8
RTN3-211ENST00000542238 ZBTB12Q9Y330 459 aaPredicted RBP20.06■□□□□ 0.8
RTN3-211ENST00000542238 SHTN1A0MZ66 631 aa20.05■□□□□ 0.8
RTN3-211ENST00000542238 PSMD14O00487 310 aa20.05■□□□□ 0.8
RTN3-211ENST00000542238 RIMBP2O15034 1052 aa20.05■□□□□ 0.8
RTN3-211ENST00000542238 USP48Q86UV5 1035 aa20.05■□□□□ 0.8
RTN3-211ENST00000542238 DBNDD1Q9H9R9 158 aa20.05■□□□□ 0.8
RTN3-211ENST00000542238 POLR2AP24928 1970 aaKnown RBP20.04■□□□□ 0.8
RTN3-211ENST00000542238 CCDC85CA6NKD9 419 aa20.04■□□□□ 0.8
RTN3-211ENST00000542238 RTL5Q5HYW3 569 aaPredicted RBP20.04■□□□□ 0.8
RTN3-211ENST00000542238 CFAP44Q96MT7 982 aa20.04■□□□□ 0.8
RTN3-211ENST00000542238 IRS4O14654 1257 aaPredicted RBP20.03■□□□□ 0.8
RTN3-211ENST00000542238 HSP90B1P14625 803 aaKnown RBP20.03■□□□□ 0.8
RTN3-211ENST00000542238 RPS12P25398 132 aaKnown RBP20.03■□□□□ 0.8
RTN3-211ENST00000542238 RPS8P62241 208 aaKnown RBP20.03■□□□□ 0.8
RTN3-211ENST00000542238 GPSM2P81274 684 aa20.03■□□□□ 0.8
RTN3-211ENST00000542238 TRIM28Q13263 835 aaKnown RBP20.03■□□□□ 0.8
RTN3-211ENST00000542238 DUSP27Q5VZP5 1158 aa20.03■□□□□ 0.8
RTN3-211ENST00000542238 SAMD7Q7Z3H4 446 aa20.03■□□□□ 0.8
RTN3-211ENST00000542238 POLLQ9UGP5 575 aa20.03■□□□□ 0.8
RTN3-211ENST00000542238 CASP8AP2Q9UKL3 1982 aa20.03■□□□□ 0.8
RTN3-211ENST00000542238 ECE2O60344 883 aa20.02■□□□□ 0.8
RTN3-211ENST00000542238 HUNKP57058 714 aa20.02■□□□□ 0.8
RTN3-211ENST00000542238 DDX10Q13206 875 aaKnown RBP20.02■□□□□ 0.8
RTN3-211ENST00000542238 NOGQ13253 232 aa20.02■□□□□ 0.8
RTN3-211ENST00000542238 TBC1D10BQ4KMP7 808 aaPredicted RBP20.02■□□□□ 0.8
RTN3-211ENST00000542238 KRT26Q7Z3Y9 468 aa20.02■□□□□ 0.8
RTN3-211ENST00000542238 RIC3Q7Z5B4 369 aa20.02■□□□□ 0.8
RTN3-211ENST00000542238 G3V3G9 751 aa20.01■□□□□ 0.79
RTN3-211ENST00000542238 GOLGA2Q08379 1002 aa20.01■□□□□ 0.79
RTN3-211ENST00000542238 DOK7Q18PE1 504 aa20.01■□□□□ 0.79
RTN3-211ENST00000542238 DCAF8Q5TAQ9 597 aa20.01■□□□□ 0.79
RTN3-211ENST00000542238 DCPSQ96C86 337 aaKnown RBP20.01■□□□□ 0.79
RTN3-211ENST00000542238 ZC3H12CQ9C0D7 883 aaKnown RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms