RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 NISCHQ9Y2I1 1504 aa38.83■■■■□ 3.81
RTN3-211ENST00000542238 ABCC9O60706 1549 aa35.08■■■■□ 3.21
RTN3-211ENST00000542238 CCDC180Q9P1Z9 1646 aa34.95■■■■□ 3.19
RTN3-211ENST00000542238 RB1CC1Q8TDY2 1594 aa33.36■■■□□ 2.93
RTN3-211ENST00000542238 NACADO15069 1562 aa33.08■■■□□ 2.89
RTN3-211ENST00000542238 DNAJC5BQ9UF47 199 aa33■■■□□ 2.87
RTN3-211ENST00000542238 DCAF8L2P0C7V8 631 aa32.9■■■□□ 2.86
RTN3-211ENST00000542238 PABPN1Q86U42 306 aaKnown RBP eCLIP32.62■■■□□ 2.81
RTN3-211ENST00000542238 UNC13AQ9UPW8 1703 aa32.6■■■□□ 2.81
RTN3-211ENST00000542238 MYO15BQ96JP2 1530 aa32.55■■■□□ 2.8
RTN3-211ENST00000542238 BICRAQ9NZM4 1560 aa32.33■■■□□ 2.77
RTN3-211ENST00000542238 ZCCHC6Q5VYS8 1495 aaKnown RBP32.12■■■□□ 2.73
RTN3-211ENST00000542238 DCAF1Q9Y4B6 1507 aa32.07■■■□□ 2.72
RTN3-211ENST00000542238 SHROOM4Q9ULL8 1493 aa31.93■■■□□ 2.7
RTN3-211ENST00000542238 SCRIBQ14160 1630 aa31.82■■■□□ 2.68
RTN3-211ENST00000542238 CC2D2AQ9P2K1 1620 aa31.69■■■□□ 2.66
RTN3-211ENST00000542238 CECR2Q9BXF3 1484 aa31.63■■■□□ 2.65
RTN3-211ENST00000542238 EIF4G1Q04637 1599 aaKnown RBP31.57■■■□□ 2.64
RTN3-211ENST00000542238 NCAPD3P42695 1498 aa30.51■■■□□ 2.48
RTN3-211ENST00000542238 DNAJC5Q9H3Z4 198 aa30.49■■■□□ 2.47
RTN3-211ENST00000542238 ATAD2BQ9ULI0 1458 aa30.38■■■□□ 2.45
RTN3-211ENST00000542238 SMARCA2P51531 1590 aa30.34■■■□□ 2.45
RTN3-211ENST00000542238 ERCC6Q03468 1493 aa30.34■■■□□ 2.45
RTN3-211ENST00000542238 SMARCA4P51532 1647 aa30.33■■■□□ 2.45
RTN3-211ENST00000542238 CUX2O14529 1486 aa30.32■■■□□ 2.44
RTN3-211ENST00000542238 HMGXB3Q12766 1538 aa30.28■■■□□ 2.44
RTN3-211ENST00000542238 BAZ1AQ9NRL2 1556 aaPredicted RBP30.18■■■□□ 2.42
RTN3-211ENST00000542238 BAZ1BQ9UIG0 1483 aaKnown RBP30.12■■■□□ 2.41
RTN3-211ENST00000542238 NESP48681 1621 aa30.07■■■□□ 2.4
RTN3-211ENST00000542238 PEG3Q9GZU2 1588 aa30.03■■■□□ 2.4
RTN3-211ENST00000542238 MROH2BQ7Z745 1585 aa29.9■■■□□ 2.38
RTN3-211ENST00000542238 LAMC3Q9Y6N6 1575 aa29.88■■■□□ 2.37
RTN3-211ENST00000542238 THOC2Q8NI27 1593 aaKnown RBP29.81■■■□□ 2.36
RTN3-211ENST00000542238 PDS5BQ9NTI5 1447 aa29.72■■■□□ 2.35
RTN3-211ENST00000542238 KIF21AQ7Z4S6 1674 aa29.72■■■□□ 2.35
RTN3-211ENST00000542238 CADPSQ9ULU8 1353 aa29.58■■■□□ 2.33
RTN3-211ENST00000542238 WIZO95785 1651 aa29.56■■■□□ 2.32
RTN3-211ENST00000542238 MRC2Q9UBG0 1479 aa29.45■■■□□ 2.31
RTN3-211ENST00000542238 WDR62O43379 1518 aa29.38■■■□□ 2.29
RTN3-211ENST00000542238 CEP164Q9UPV0 1460 aa29.31■■■□□ 2.28
RTN3-211ENST00000542238 FANCD2Q9BXW9 1451 aa29.25■■■□□ 2.27
RTN3-211ENST00000542238 RSF1Q96T23 1441 aaPredicted RBP29.21■■■□□ 2.27
RTN3-211ENST00000542238 CFTRP13569 1480 aa29.2■■■□□ 2.26
RTN3-211ENST00000542238 TOP2AP11388 1531 aaKnown RBP29.17■■■□□ 2.26
RTN3-211ENST00000542238 TRIM41Q8WV44 630 aa29.1■■■□□ 2.25
RTN3-211ENST00000542238 URB2Q14146 1524 aaKnown RBP28.99■■■□□ 2.23
RTN3-211ENST00000542238 PRDM2Q13029 1718 aa28.97■■■□□ 2.23
RTN3-211ENST00000542238 OSCARQ8IYS5 282 aa28.94■■■□□ 2.22
RTN3-211ENST00000542238 CCDC88BA6NC98 1476 aa28.84■■■□□ 2.21
RTN3-211ENST00000542238 IFT140Q96RY7 1462 aa28.73■■■□□ 2.19
RTN3-211ENST00000542238 TOPBP1Q92547 1522 aa28.68■■■□□ 2.18
RTN3-211ENST00000542238 ZNF608Q9ULD9 1512 aaPredicted RBP28.66■■■□□ 2.18
RTN3-211ENST00000542238 ABCC8Q09428 1581 aa28.65■■■□□ 2.18
RTN3-211ENST00000542238 DNMBPQ6XZF7 1577 aa28.57■■■□□ 2.16
RTN3-211ENST00000542238 RIMBP3CA6NJZ7 1639 aa28.55■■■□□ 2.16
RTN3-211ENST00000542238 RIMBP3BA6NNM3 1639 aa28.55■■■□□ 2.16
RTN3-211ENST00000542238 RIMBP3Q9UFD9 1639 aa28.55■■■□□ 2.16
RTN3-211ENST00000542238 EIF4G3O43432 1585 aaKnown RBP28.53■■■□□ 2.16
RTN3-211ENST00000542238 ARHGEF11O15085 1522 aa28.43■■■□□ 2.14
RTN3-211ENST00000542238 TARBP1Q13395 1621 aaKnown RBP28.43■■■□□ 2.14
RTN3-211ENST00000542238 AQRO60306 1485 aaKnown RBP eCLIP28.4■■■□□ 2.143e-7■■■■■ 30.5
RTN3-211ENST00000542238 CHD1O14646 1710 aa28.38■■■□□ 2.13
RTN3-211ENST00000542238 POLA1P09884 1462 aaPredicted RBP28.36■■■□□ 2.13
RTN3-211ENST00000542238 FBLN2P98095 1184 aa28.3■■■□□ 2.12
RTN3-211ENST00000542238 CYB5RLQ6IPT4 315 aa28.26■■■□□ 2.11
RTN3-211ENST00000542238 RAD54L2Q9Y4B4 1467 aa28.26■■■□□ 2.11
RTN3-211ENST00000542238 SOGA1O94964 1423 aa28.26■■■□□ 2.11
RTN3-211ENST00000542238 TDRD9Q8NDG6 1382 aaKnown RBP28.21■■■□□ 2.11
RTN3-211ENST00000542238 FGD5Q6ZNL6 1462 aa28.17■■■□□ 2.1
RTN3-211ENST00000542238 WDR97A6NE52 1622 aa28.17■■■□□ 2.1
RTN3-211ENST00000542238 ARAP1Q96P48 1450 aa28.12■■■□□ 2.09
RTN3-211ENST00000542238 SNAPC4Q5SXM2 1469 aa28.11■■■□□ 2.09
RTN3-211ENST00000542238 CUX1P39880 1505 aa28.1■■■□□ 2.09
RTN3-211ENST00000542238 CHMP7Q8WUX9 453 aaPredicted RBP28.07■■■□□ 2.08
RTN3-211ENST00000542238 MAGI1Q96QZ7 1491 aaPredicted RBP28.05■■■□□ 2.08
RTN3-211ENST00000542238 GRIN2BQ13224 1484 aa28.03■■■□□ 2.08
RTN3-211ENST00000542238 TRHP20396 242 aaPredicted RBP28.03■■■□□ 2.08
RTN3-211ENST00000542238 SYNJ1O43426 1573 aa28.03■■■□□ 2.08
RTN3-211ENST00000542238 CLASP1Q7Z460 1538 aa28■■■□□ 2.07
RTN3-211ENST00000542238 SYNJ2O15056 1496 aa27.95■■■□□ 2.07
RTN3-211ENST00000542238 PBRM1Q86U86 1689 aa27.93■■■□□ 2.06
RTN3-211ENST00000542238 GAPVD1Q14C86 1478 aa27.91■■■□□ 2.06
RTN3-211ENST00000542238 SUPT5HO00267 1087 aaKnown RBP27.85■■■□□ 2.05
RTN3-211ENST00000542238 ABCA10Q8WWZ4 1543 aa27.85■■■□□ 2.05
RTN3-211ENST00000542238 ABCA5Q8WWZ7 1642 aa27.81■■■□□ 2.04
RTN3-211ENST00000542238 WRNQ14191 1432 aaPredicted RBP eCLIP27.73■■■□□ 2.03
RTN3-211ENST00000542238 GRIN2AQ12879 1464 aa27.66■■■□□ 2.02
RTN3-211ENST00000542238 TOP2BQ02880 1626 aa27.64■■■□□ 2.02
RTN3-211ENST00000542238 BIVM-ERCC5R4GMW8 1640 aa27.64■■■□□ 2.02
RTN3-211ENST00000542238 ADAMTS12P58397 1594 aa27.62■■■□□ 2.01
RTN3-211ENST00000542238 CEP170Q5SW79 1584 aa27.56■■■□□ 2
RTN3-211ENST00000542238 FHAD1B1AJZ9 1412 aa27.55■■■□□ 2
RTN3-211ENST00000542238 NUP160Q12769 1436 aa27.55■■■□□ 2
RTN3-211ENST00000542238 ERCC6L2Q5T890 1561 aa27.53■■■□□ 2
RTN3-211ENST00000542238 ERICH3Q5RHP9 1530 aa27.51■■□□□ 1.99
RTN3-211ENST00000542238 SHROOM2Q13796 1616 aa27.47■■□□□ 1.99
RTN3-211ENST00000542238 AEBP2Q6ZN18 517 aaPredicted RBP27.37■■□□□ 1.97
RTN3-211ENST00000542238 PRG4Q92954 1404 aaPredicted RBP27.33■■□□□ 1.97
RTN3-211ENST00000542238 JPH4Q96JJ6 628 aa27.31■■□□□ 1.96
RTN3-211ENST00000542238 RUSC2Q8N2Y8 1516 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms