RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PHF20L1A8MW92 1017 aa7.95□□□□□ -1.14
CD44-217ENST00000525348 ZBTB42B2RXF5 422 aa7.95□□□□□ -1.14
CD44-217ENST00000525348 MAP3K6O95382 1288 aa7.95□□□□□ -1.14
CD44-217ENST00000525348 MPSTP25325 297 aa7.95□□□□□ -1.14
CD44-217ENST00000525348 COL9A3Q14050 684 aaPredicted RBP7.95□□□□□ -1.14
CD44-217ENST00000525348 C20orf204Q6ZNR8 217 aa7.95□□□□□ -1.14
CD44-217ENST00000525348 ABTB2Q8N961 1025 aa7.95□□□□□ -1.14
CD44-217ENST00000525348 TRIM11Q96F44 468 aa7.95□□□□□ -1.14
CD44-217ENST00000525348 GDF11O95390 407 aa7.94□□□□□ -1.14
CD44-217ENST00000525348 RARAP10276 462 aa7.94□□□□□ -1.14
CD44-217ENST00000525348 ALAS2P22557 587 aa7.94□□□□□ -1.14
CD44-217ENST00000525348 KANK3Q6NY19 840 aa7.94□□□□□ -1.14
CD44-217ENST00000525348 DHX32Q7L7V1 743 aaKnown RBP7.94□□□□□ -1.14
CD44-217ENST00000525348 MICALL1Q8N3F8 863 aa7.94□□□□□ -1.14
CD44-217ENST00000525348 M0R082 166 aa7.93□□□□□ -1.14
CD44-217ENST00000525348 ZNF211Q13398 564 aaPredicted RBP7.93□□□□□ -1.14
CD44-217ENST00000525348 TMEM151AQ8N4L1 468 aa7.93□□□□□ -1.14
CD44-217ENST00000525348 ZNF417Q8TAU3 575 aa7.93□□□□□ -1.14
CD44-217ENST00000525348 ZNF587Q96SQ5 575 aaPredicted RBP7.93□□□□□ -1.14
CD44-217ENST00000525348 ANO2Q9NQ90 1003 aa7.93□□□□□ -1.14
CD44-217ENST00000525348 GNB5O14775 395 aa7.92□□□□□ -1.14
CD44-217ENST00000525348 MMP20O60882 483 aa7.92□□□□□ -1.14
CD44-217ENST00000525348 EIF1AXP47813 144 aaKnown RBP7.92□□□□□ -1.14
CD44-217ENST00000525348 MLLT1Q03111 559 aaPredicted RBP7.92□□□□□ -1.14
CD44-217ENST00000525348 PIK3R5Q8WYR1 880 aa7.92□□□□□ -1.14
CD44-217ENST00000525348 DCAF5Q96JK2 942 aa7.92□□□□□ -1.14
CD44-217ENST00000525348 UBAP1LF5GYI3 381 aa7.91□□□□□ -1.14
CD44-217ENST00000525348 ITGB2P05107 769 aa7.91□□□□□ -1.14
CD44-217ENST00000525348 NPR3P17342 541 aa7.91□□□□□ -1.14
CD44-217ENST00000525348 SERPINB4P48594 390 aa7.91□□□□□ -1.14
CD44-217ENST00000525348 PLAURQ03405 335 aa7.91□□□□□ -1.14
CD44-217ENST00000525348 KCTD17Q8N5Z5 321 aa7.91□□□□□ -1.14
CD44-217ENST00000525348 TRPM4Q8TD43 1214 aa7.91□□□□□ -1.14
CD44-217ENST00000525348 NUDT16Q96DE0 195 aaKnown RBP7.91□□□□□ -1.14
CD44-217ENST00000525348 TLR7Q9NYK1 1049 aaKnown RBP7.91□□□□□ -1.14
CD44-217ENST00000525348 ABL1P00519 1130 aa7.9□□□□□ -1.14
CD44-217ENST00000525348 GPLD1P80108 840 aa7.9□□□□□ -1.14
CD44-217ENST00000525348 NOM1Q5C9Z4 860 aaKnown RBP7.9□□□□□ -1.14
CD44-217ENST00000525348 NLRP13Q86W25 1043 aa7.9□□□□□ -1.14
CD44-217ENST00000525348 NUDT8Q8WV74 236 aa7.9□□□□□ -1.14
CD44-217ENST00000525348 EDEM1Q92611 657 aa7.9□□□□□ -1.14
CD44-217ENST00000525348 LPIN3Q9BQK8 851 aa7.9□□□□□ -1.14
CD44-217ENST00000525348 PRDM6Q9NQX0 595 aa7.9□□□□□ -1.14
CD44-217ENST00000525348 FAM13BQ9NYF5 915 aa7.9□□□□□ -1.14
CD44-217ENST00000525348 PDGFAP04085 211 aa7.89□□□□□ -1.15
CD44-217ENST00000525348 NID1P14543 1247 aa7.89□□□□□ -1.15
CD44-217ENST00000525348 CPB1P15086 417 aa7.89□□□□□ -1.15
CD44-217ENST00000525348 NRLP54845 237 aa7.89□□□□□ -1.15
CD44-217ENST00000525348 PERM1Q5SV97 790 aa7.89□□□□□ -1.15
CD44-217ENST00000525348 PSAPL1Q6NUJ1 521 aa7.89□□□□□ -1.15
CD44-217ENST00000525348 HFE2Q6ZVN8 426 aa7.89□□□□□ -1.15
CD44-217ENST00000525348 GGNBP2Q9H3C7 697 aa7.89□□□□□ -1.15
CD44-217ENST00000525348 KRBA1A5PL33 1030 aa7.88□□□□□ -1.15
CD44-217ENST00000525348 A6NHS1 94 aa7.88□□□□□ -1.15
CD44-217ENST00000525348 HOXD8P13378 290 aaPredicted RBP7.88□□□□□ -1.15
CD44-217ENST00000525348 DNM1Q05193 864 aaKnown RBP7.88□□□□□ -1.15
CD44-217ENST00000525348 ECM1Q16610 540 aa7.88□□□□□ -1.15
CD44-217ENST00000525348 COL13A1Q5TAT6 717 aaPredicted RBP7.88□□□□□ -1.15
CD44-217ENST00000525348 FAM35AQ86V20 835 aa7.88□□□□□ -1.15
CD44-217ENST00000525348 TXNDC2Q86VQ3 553 aa7.88□□□□□ -1.15
CD44-217ENST00000525348 PLVAPQ9BX97 442 aa7.88□□□□□ -1.15
CD44-217ENST00000525348 J3QW42 95 aa7.87□□□□□ -1.15
CD44-217ENST00000525348 FZD6O60353 706 aa7.87□□□□□ -1.15
CD44-217ENST00000525348 ARID4AP29374 1257 aaPredicted RBP7.87□□□□□ -1.15
CD44-217ENST00000525348 FKBP4Q02790 459 aaKnown RBP eCLIP7.87□□□□□ -1.15
CD44-217ENST00000525348 B4GALNT3Q6L9W6 998 aa7.87□□□□□ -1.15
CD44-217ENST00000525348 NSUN5Q96P11 429 aaKnown RBP7.87□□□□□ -1.15
CD44-217ENST00000525348 JPH1Q9HDC5 661 aaPredicted RBP7.87□□□□□ -1.15
CD44-217ENST00000525348 TMEM63CQ9P1W3 806 aa7.87□□□□□ -1.15
CD44-217ENST00000525348 POLIQ9UNA4 740 aa7.87□□□□□ -1.15
CD44-217ENST00000525348 MTMR7Q9Y216 660 aa7.87□□□□□ -1.15
CD44-217ENST00000525348 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.87□□□□□ -1.15
CD44-217ENST00000525348 ICMTO60725 284 aa7.86□□□□□ -1.15
CD44-217ENST00000525348 CYP2E1P05181 493 aaPredicted RBP7.86□□□□□ -1.15
CD44-217ENST00000525348 PSAPP07602 524 aa7.86□□□□□ -1.15
CD44-217ENST00000525348 MZF1P28698 734 aaPredicted RBP7.86□□□□□ -1.15
CD44-217ENST00000525348 SOX18P35713 384 aa7.86□□□□□ -1.15
CD44-217ENST00000525348 AFF1P51825 1210 aaKnown RBP7.86□□□□□ -1.15
CD44-217ENST00000525348 SF3B2Q13435 895 aaKnown RBP7.86□□□□□ -1.15
CD44-217ENST00000525348 GRIK5Q16478 980 aa7.86□□□□□ -1.15
CD44-217ENST00000525348 PLA2G4EQ3MJ16 856 aa7.86□□□□□ -1.15
CD44-217ENST00000525348 OR13H1Q8NG92 308 aa7.86□□□□□ -1.15
CD44-217ENST00000525348 CCDC87Q9NVE4 849 aa7.86□□□□□ -1.15
CD44-217ENST00000525348 FAM229AH3BQW9 127 aa7.85□□□□□ -1.15
CD44-217ENST00000525348 LILRB5O75023 590 aa7.85□□□□□ -1.15
CD44-217ENST00000525348 ILDR2Q71H61 639 aa7.85□□□□□ -1.15
CD44-217ENST00000525348 ELP3Q9H9T3 547 aa7.85□□□□□ -1.15
CD44-217ENST00000525348 EGFL7Q9UHF1 273 aa7.85□□□□□ -1.15
CD44-217ENST00000525348 FNDC3AQ9Y2H6 1198 aaKnown RBP7.85□□□□□ -1.15
CD44-217ENST00000525348 LOC102724428A0A0B4J2F2 783 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 H3BRB1 525 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 PIK3R2O00459 728 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 RGS9O75916 674 aaPredicted RBP7.84□□□□□ -1.15
CD44-217ENST00000525348 FAM13AO94988 1023 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 EIF2AK2P19525 551 aaKnown RBP7.84□□□□□ -1.15
CD44-217ENST00000525348 SIK1P57059 783 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 PCSK7Q16549 785 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 ALKBH2Q6NS38 261 aa7.84□□□□□ -1.15
CD44-217ENST00000525348 SMG9Q9H0W8 520 aaKnown RBP7.84□□□□□ -1.15
CD44-217ENST00000525348 TUT1Q9H6E5 874 aaKnown RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms