RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	GPLD1	P80108	840 aa		3.95	□□□□□ -1.78
CD44-212	ENST00000524922	TRIM28	Q13263	835 aa	Known RBP	3.95	□□□□□ -1.78
CD44-212	ENST00000524922	COX20	Q5RI15	118 aa		3.95	□□□□□ -1.78
CD44-212	ENST00000524922	PERM1	Q5SV97	790 aa		3.95	□□□□□ -1.78
CD44-212	ENST00000524922	NUDT8	Q8WV74	236 aa		3.95	□□□□□ -1.78
CD44-212	ENST00000524922	TTC9	Q92623	222 aa		3.95	□□□□□ -1.78
CD44-212	ENST00000524922	JPH1	Q9HDC5	661 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-212	ENST00000524922	FRRS1L	Q9P0K9	344 aa		3.95	□□□□□ -1.78
CD44-212	ENST00000524922	KCNMB2	Q9Y691	235 aa		3.95	□□□□□ -1.78
CD44-212	ENST00000524922	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.94	□□□□□ -1.78
CD44-212	ENST00000524922	TNFRSF10B	O14763	440 aa		3.94	□□□□□ -1.78
CD44-212	ENST00000524922	ARSD	P51689	593 aa		3.94	□□□□□ -1.78
CD44-212	ENST00000524922	C11orf91	Q3C1V1	193 aa		3.94	□□□□□ -1.78
CD44-212	ENST00000524922	CAPN12	Q6ZSI9	719 aa		3.94	□□□□□ -1.78
CD44-212	ENST00000524922	DHX32	Q7L7V1	743 aa	Known RBP	3.94	□□□□□ -1.78
CD44-212	ENST00000524922	KRTAP9-2	Q9BYQ4	174 aa		3.94	□□□□□ -1.78
CD44-212	ENST00000524922	SAP130	Q9H0E3	1048 aa		3.94	□□□□□ -1.78
CD44-212	ENST00000524922	SLAIN2	Q9P270	581 aa		3.94	□□□□□ -1.78
CD44-212	ENST00000524922	USP20	Q9Y2K6	914 aa		3.94	□□□□□ -1.78
CD44-212	ENST00000524922	RTCB	Q9Y3I0	505 aa	Known RBP	3.94	□□□□□ -1.78
CD44-212	ENST00000524922	RBM19	Q9Y4C8	960 aa	Known RBP	3.94	□□□□□ -1.78
CD44-212	ENST00000524922	C9orf172	C9J069	976 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	TM4SF5	O14894	197 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	SASH3	O75995	380 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	APBA3	O96018	575 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	H2AFB1	P0C5Y9	115 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	H2AFB2	P0C5Z0	115 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	NRL	P54845	237 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	ELOA	Q14241	798 aa	Known RBP	3.93	□□□□□ -1.78
CD44-212	ENST00000524922	TRIP4	Q15650	581 aa	Predicted RBP	3.93	□□□□□ -1.78
CD44-212	ENST00000524922	PRSS36	Q5K4E3	855 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	TRAPPC3L	Q5T215	181 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	MSL1	Q68DK7	614 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	FAM35A	Q86V20	835 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	TXNRD3	Q86VQ6	643 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	ETFBKMT	Q8IXQ9	262 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	STK32A	Q8WU08	396 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	NACC1	Q96RE7	527 aa		3.93	□□□□□ -1.78
CD44-212	ENST00000524922	ZNF777	Q9ULD5	760 aa	Predicted RBP	3.93	□□□□□ -1.78
CD44-212	ENST00000524922	ACIN1	Q9UKV3	1341 aa	Known RBP	3.93	□□□□□ -1.78
CD44-212	ENST00000524922	RGS9	O75916	674 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-212	ENST00000524922	CPB1	P15086	417 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	TBC1D8B	Q0IIM8	1120 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	SWI5	Q1ZZU3	235 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	CDCA8	Q53HL2	280 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	ZMYM1	Q5SVZ6	1142 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	ADAMTSL4	Q6UY14	1074 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	KRT25	Q7Z3Z0	450 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	FBXO11	Q86XK2	927 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	TREML1	Q86YW5	311 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	DMRTC2	Q8IXT2	367 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-212	ENST00000524922	DTWD1	Q8N5C7	304 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	FAM200A	Q8TCP9	573 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	IGFLR1	Q9H665	355 aa		3.92	□□□□□ -1.78
CD44-212	ENST00000524922	TLR7	Q9NYK1	1049 aa	Known RBP	3.92	□□□□□ -1.78
CD44-212	ENST00000524922	NOVA2	Q9UNW9	492 aa	Known RBP	3.92	□□□□□ -1.78
CD44-212	ENST00000524922	KRTAP9-6	A0A140TA67	174 aa		3.91	□□□□□ -1.78
CD44-212	ENST00000524922	DLL1	O00548	723 aa		3.91	□□□□□ -1.78
CD44-212	ENST00000524922	MMP20	O60882	483 aa		3.91	□□□□□ -1.78
CD44-212	ENST00000524922	EPB42	P16452	691 aa		3.91	□□□□□ -1.78
CD44-212	ENST00000524922	NRG1	Q02297	640 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-212	ENST00000524922	MLLT1	Q03111	559 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-212	ENST00000524922	COL26A1	Q96A83	441 aa		3.91	□□□□□ -1.78
CD44-212	ENST00000524922	PRIMPOL	Q96LW4	560 aa		3.91	□□□□□ -1.78
CD44-212	ENST00000524922	PNMA5	Q96PV4	448 aa		3.91	□□□□□ -1.78
CD44-212	ENST00000524922	ZBTB39	O15060	712 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	PRMT3	O60678	531 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	XYLB	O75191	536 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	RARA	P10276	462 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	NOS3	P29474	1203 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	SOX18	P35713	384 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	RAC1	P63000	192 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	PCSK7	Q16549	785 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	ARTN	Q5T4W7	220 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	MEGF10	Q96KG7	1140 aa		3.9	□□□□□ -1.79
CD44-212	ENST00000524922	SMG9	Q9H0W8	520 aa	Known RBP	3.9	□□□□□ -1.79
CD44-212	ENST00000524922	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	3.89	□□□□□ -1.79
CD44-212	ENST00000524922		J3QW42	95 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922	ATG7	O95352	703 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922	RFX1	P22670	979 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922	COL13A1	Q5TAT6	717 aa	Predicted RBP	3.89	□□□□□ -1.79
CD44-212	ENST00000524922	TMEM164	Q5U3C3	297 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922	IGF2-AS	Q6U949	168 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922		Q6ZS46	218 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922	HFE2	Q6ZVN8	426 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922	DZIP1L	Q8IYY4	767 aa	Known RBP	3.89	□□□□□ -1.79
CD44-212	ENST00000524922	RGL4	Q8IZJ4	473 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922	WFDC12	Q8WWY7	111 aa		3.89	□□□□□ -1.79
CD44-212	ENST00000524922	CXXC1	Q9P0U4	656 aa	Predicted RBP	3.89	□□□□□ -1.79
CD44-212	ENST00000524922	LOC102724428	A0A0B4J2F2	783 aa		3.88	□□□□□ -1.79
CD44-212	ENST00000524922	SIK1	P57059	783 aa		3.88	□□□□□ -1.79
CD44-212	ENST00000524922	SETDB1	Q15047	1291 aa		3.88	□□□□□ -1.79
CD44-212	ENST00000524922	C16orf46	Q6P387	395 aa		3.88	□□□□□ -1.79
CD44-212	ENST00000524922	ELMSAN1	Q6PJG2	1045 aa		3.88	□□□□□ -1.79
CD44-212	ENST00000524922	CLP1	Q92989	425 aa	Known RBP	3.88	□□□□□ -1.79
CD44-212	ENST00000524922	PLD4	Q96BZ4	506 aa		3.88	□□□□□ -1.79
CD44-212	ENST00000524922	PSMG3-AS1	Q96PY0	264 aa		3.88	□□□□□ -1.79
CD44-212	ENST00000524922	IREB2	P48200	963 aa	Known RBP	3.87	□□□□□ -1.79
CD44-212	ENST00000524922	NLRP13	Q86W25	1043 aa		3.87	□□□□□ -1.79
CD44-212	ENST00000524922	WFDC8	Q8IUA0	241 aa		3.87	□□□□□ -1.79

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