RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 TSPY26PQ9H489 355 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 SYCE3A1L190 88 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 UQCRFS1P1P0C7P4 283 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 TNNI3KQ59H18 835 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 CARD10Q9BWT7 1032 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 FPGT-TNNI3KV9GXZ4 949 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 CDKL5O76039 1030 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 CYP7A1P22680 504 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 WDR17Q8IZU2 1322 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 PTPRMP28827 1452 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 NEXMIFQ5QGS0 1516 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 HMGB1P09429 215 aaKnown RBP16.57■□□□□ 0.24
TCOF1-207ENST00000504761 CAMK4Q16566 473 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 TNMDQ9H2S6 317 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 TCEAL9Q9UHQ7 104 aa16.57■□□□□ 0.24
TCOF1-207ENST00000504761 FAM227BQ96M60 508 aa16.56■□□□□ 0.24
TCOF1-207ENST00000504761 SPATA31A3Q5VYP0 1347 aa16.56■□□□□ 0.24
TCOF1-207ENST00000504761 TAF5LO75529 589 aa16.56■□□□□ 0.24
TCOF1-207ENST00000504761 ZGPATQ8N5A5 531 aaKnown RBP16.56■□□□□ 0.24
TCOF1-207ENST00000504761 MIGA1Q8NAN2 632 aa16.56■□□□□ 0.24
TCOF1-207ENST00000504761 ARHGEF40Q8TER5 1519 aa16.56■□□□□ 0.24
TCOF1-207ENST00000504761 CCDC87Q9NVE4 849 aa16.56■□□□□ 0.24
TCOF1-207ENST00000504761 QRICH2Q9H0J4 1663 aa16.56■□□□□ 0.24
TCOF1-207ENST00000504761 CYP27B1O15528 508 aa16.55■□□□□ 0.24
TCOF1-207ENST00000504761 TRIM5Q9C035 493 aa16.55■□□□□ 0.24
TCOF1-207ENST00000504761 SLC12A7Q9Y666 1083 aa16.55■□□□□ 0.24
TCOF1-207ENST00000504761 F8W031 263 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-207ENST00000504761 MPHOSPH10O00566 681 aaKnown RBP16.55■□□□□ 0.24
TCOF1-207ENST00000504761 C8orf76Q96K31 380 aa16.55■□□□□ 0.24
TCOF1-207ENST00000504761 STX6O43752 255 aa16.55■□□□□ 0.24
TCOF1-207ENST00000504761 GSPT1P15170 499 aaKnown RBP16.55■□□□□ 0.24
TCOF1-207ENST00000504761 SSH3Q8TE77 659 aa16.55■□□□□ 0.24
TCOF1-207ENST00000504761 ADGRL3Q9HAR2 1447 aa16.55■□□□□ 0.24
TCOF1-207ENST00000504761 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.55■□□□□ 0.242e-7■■■■■ 35.6
TCOF1-207ENST00000504761 CFAP45Q9UL16 551 aa16.55■□□□□ 0.24
TCOF1-207ENST00000504761 BAG4O95429 457 aaKnown RBP16.54■□□□□ 0.24
TCOF1-207ENST00000504761 ADAMTS13Q76LX8 1427 aa16.54■□□□□ 0.24
TCOF1-207ENST00000504761 TMEM67Q5HYA8 995 aa16.54■□□□□ 0.24
TCOF1-207ENST00000504761 IQCA1Q86XH1 822 aa16.54■□□□□ 0.24
TCOF1-207ENST00000504761 ZNF592Q92610 1267 aa16.54■□□□□ 0.24
TCOF1-207ENST00000504761 TCIRG1Q13488 830 aa16.54■□□□□ 0.24
TCOF1-207ENST00000504761 PCMTD1Q96MG8 357 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-207ENST00000504761 ANKARQ7Z5J8 1434 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 ST5P78524 1137 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 SIRT2Q8IXJ6 389 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 JMYQ8N9B5 988 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 EAF2Q96CJ1 260 aaPredicted RBP16.53■□□□□ 0.24
TCOF1-207ENST00000504761 GRPEL1Q9HAV7 217 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 HMG20BQ9P0W2 317 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 TRAPPC3LQ5T215 181 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 SETBP1Q9Y6X0 1596 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 GOLGA8AA7E2F4 631 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 CREB3L3Q68CJ9 461 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 NCOA7Q8NI08 942 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 ZFYP08048 801 aaPredicted RBP16.53■□□□□ 0.24
TCOF1-207ENST00000504761 GLIPR1L2Q4G1C9 344 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 MFSD6Q6ZSS7 791 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 CCDC47Q96A33 483 aaKnown RBP16.53■□□□□ 0.24
TCOF1-207ENST00000504761 SLC4A4Q9Y6R1 1079 aa16.53■□□□□ 0.24
TCOF1-207ENST00000504761 DIP2BQ9P265 1576 aa16.52■□□□□ 0.24
TCOF1-207ENST00000504761 AK2P54819 239 aa16.52■□□□□ 0.24
TCOF1-207ENST00000504761 SPC24Q8NBT2 197 aa16.52■□□□□ 0.24
TCOF1-207ENST00000504761 ZNF444Q8N0Y2 327 aaPredicted RBP16.52■□□□□ 0.24
TCOF1-207ENST00000504761 PIK3C2BO00750 1634 aa16.52■□□□□ 0.23
TCOF1-207ENST00000504761 KLF18A0A0U1RQI7 1052 aa16.52■□□□□ 0.23
TCOF1-207ENST00000504761 RNF113AO15541 343 aaKnown RBP16.52■□□□□ 0.23
TCOF1-207ENST00000504761 ANAPC15P60006 121 aa16.52■□□□□ 0.23
TCOF1-207ENST00000504761 Q6ZUG5 572 aa16.52■□□□□ 0.23
TCOF1-207ENST00000504761 XAGE2Q96GT9 111 aa16.52■□□□□ 0.23
TCOF1-207ENST00000504761 ZBTB1Q9Y2K1 713 aa16.52■□□□□ 0.23
TCOF1-207ENST00000504761 CRACR2BQ8N4Y2 399 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-207ENST00000504761 MAGEB6Q8N7X4 407 aa16.51■□□□□ 0.23
TCOF1-207ENST00000504761 ORC3Q9UBD5 711 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-207ENST00000504761 PNPLA6Q8IY17 1366 aa16.51■□□□□ 0.23
TCOF1-207ENST00000504761 CPSF1Q10570 1443 aaKnown RBP16.51■□□□□ 0.23
TCOF1-207ENST00000504761 OLFM4Q6UX06 510 aa16.51■□□□□ 0.23
TCOF1-207ENST00000504761 PDE8AO60658 829 aa16.51■□□□□ 0.23
TCOF1-207ENST00000504761 SOGA3Q5TF21 947 aa16.51■□□□□ 0.23
TCOF1-207ENST00000504761 RNF41Q9H4P4 317 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-207ENST00000504761 CCDC192P0DO97 292 aa16.51■□□□□ 0.23
TCOF1-207ENST00000504761 NAA16Q6N069 864 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-207ENST00000504761 NUP62CLQ9H1M0 184 aa16.51■□□□□ 0.23
TCOF1-207ENST00000504761 CTCFLQ8NI51 663 aaPredicted RBP16.5■□□□□ 0.23
TCOF1-207ENST00000504761 TSPY2A6NKD2 308 aa16.5■□□□□ 0.23
TCOF1-207ENST00000504761 MCM5P33992 734 aa16.5■□□□□ 0.23
TCOF1-207ENST00000504761 AGLP35573 1532 aa16.5■□□□□ 0.23
TCOF1-207ENST00000504761 TSR1Q2NL82 804 aaKnown RBP16.5■□□□□ 0.23
TCOF1-207ENST00000504761 SNX21Q969T3 373 aa16.5■□□□□ 0.23
TCOF1-207ENST00000504761 NAT10Q9H0A0 1025 aaKnown RBP16.5■□□□□ 0.23
TCOF1-207ENST00000504761 CCDC171Q6TFL3 1326 aa16.5■□□□□ 0.23
TCOF1-207ENST00000504761 NYXQ9GZU5 481 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 KIF24Q5T7B8 1368 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 LETM1O95202 739 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-207ENST00000504761 HMGN5P82970 282 aaKnown RBP16.49■□□□□ 0.23
TCOF1-207ENST00000504761 RBM27Q9P2N5 1060 aaKnown RBP16.49■□□□□ 0.23
TCOF1-207ENST00000504761 KDRP35968 1356 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 LOC102724428A0A0B4J2F2 783 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 TPM3P06753 285 aa16.49■□□□□ 0.23
TCOF1-207ENST00000504761 BRPF1P55201 1214 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-207ENST00000504761 SIK1P57059 783 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms