RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PARP10Q53GL7 1025 aa9.45□□□□□ -0.9
USP4-211ENST00000485450 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.45□□□□□ -0.9
USP4-211ENST00000485450 SCN4AP35499 1836 aa9.45□□□□□ -0.9
USP4-211ENST00000485450 R3HDM1Q15032 1099 aaKnown RBP9.45□□□□□ -0.9
USP4-211ENST00000485450 GTPBP4Q9BZE4 634 aaKnown RBP9.45□□□□□ -0.9
USP4-211ENST00000485450 TRAK2O60296 914 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 CCDC94Q9BW85 323 aaPredicted RBP9.44□□□□□ -0.9
USP4-211ENST00000485450 MIS18AQ9NYP9 233 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 CHPF2Q9P2E5 772 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 FOCADQ5VW36 1801 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 RARSP54136 660 aaKnown RBP9.44□□□□□ -0.9
USP4-211ENST00000485450 TCIRG1Q13488 830 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 KRT24Q2M2I5 525 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 HSP90AB3PQ58FF7 597 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 ARID3AQ99856 593 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 METTL22Q9BUU2 404 aaPredicted RBP9.44□□□□□ -0.9
USP4-211ENST00000485450 GZF1Q9H116 711 aaPredicted RBP9.44□□□□□ -0.9
USP4-211ENST00000485450 PRR29P0C7W0 189 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 NFIXQ14938 502 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 C7orf43Q8WVR3 580 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 SYTL4Q96C24 671 aaPredicted RBP9.44□□□□□ -0.9
USP4-211ENST00000485450 SPON1Q9HCB6 807 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 IRS2Q9Y4H2 1338 aa9.44□□□□□ -0.9
USP4-211ENST00000485450 ABCC12Q96J65 1359 aa9.43□□□□□ -0.9
USP4-211ENST00000485450 LETM1O95202 739 aaPredicted RBP9.43□□□□□ -0.9
USP4-211ENST00000485450 EXOSC9Q06265 439 aaKnown RBP9.43□□□□□ -0.9
USP4-211ENST00000485450 KSR2Q6VAB6 950 aa9.43□□□□□ -0.9
USP4-211ENST00000485450 PTCD1O75127 700 aaKnown RBP9.43□□□□□ -0.9
USP4-211ENST00000485450 BEND3Q5T5X7 828 aa9.43□□□□□ -0.9
USP4-211ENST00000485450 TBC1D9BQ66K14 1250 aa9.43□□□□□ -0.9
USP4-211ENST00000485450 TSR2Q969E8 191 aaKnown RBP9.43□□□□□ -0.9
USP4-211ENST00000485450 RBM42Q9BTD8 480 aaKnown RBP9.43□□□□□ -0.9
USP4-211ENST00000485450 H7C1W4 665 aa9.43□□□□□ -0.9
USP4-211ENST00000485450 INTS3Q68E01 1043 aaKnown RBP9.43□□□□□ -0.9
USP4-211ENST00000485450 STYK1Q6J9G0 422 aa9.43□□□□□ -0.9
USP4-211ENST00000485450 DZIP3Q86Y13 1208 aaKnown RBP9.43□□□□□ -0.9
USP4-211ENST00000485450 TFCP2L1Q9NZI6 479 aa9.43□□□□□ -0.9
USP4-211ENST00000485450 MYH13Q9UKX3 1938 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 IGKV5-2P06315 115 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 KCNQ4P56696 695 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 HLFQ16534 295 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 HDGFL1Q5TGJ6 251 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 ZSCAN30Q86W11 494 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 NLRP10Q86W26 655 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 CCDC191Q8NCU4 936 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 CDCA7LQ96GN5 454 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 THSD7BQ9C0I4 1608 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 COL4A5P29400 1685 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 ALDH1L1O75891 902 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 SF3B3Q15393 1217 aaKnown RBP9.42□□□□□ -0.9
USP4-211ENST00000485450 RABL6Q3YEC7 729 aaPredicted RBP9.42□□□□□ -0.9
USP4-211ENST00000485450 C20orf194Q5TEA3 1177 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 USPL1Q5W0Q7 1092 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 TTLL7Q6ZT98 887 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 ZBTB9Q96C00 473 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 BRIP1Q9BX63 1249 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 ZNF652Q9Y2D9 606 aa9.42□□□□□ -0.9
USP4-211ENST00000485450 PCCAP05165 728 aaPredicted RBP9.41□□□□□ -0.9
USP4-211ENST00000485450 CSF1RP07333 972 aa9.41□□□□□ -0.9
USP4-211ENST00000485450 GRIPAP1Q4V328 841 aa9.4□□□□□ -0.9
USP4-211ENST00000485450 PRR5LQ6MZQ0 368 aa9.4□□□□□ -0.9
USP4-211ENST00000485450 PPP1R9BQ96SB3 815 aa9.4□□□□□ -0.9
USP4-211ENST00000485450 VPS33BQ9H267 617 aa9.4□□□□□ -0.9
USP4-211ENST00000485450 MTX1Q13505 466 aa9.4□□□□□ -0.9
USP4-211ENST00000485450 RTFDC1Q9BY42 306 aaPredicted RBP9.4□□□□□ -0.9
USP4-211ENST00000485450 NYXQ9GZU5 481 aa9.4□□□□□ -0.9
USP4-211ENST00000485450 SRP68Q9UHB9 627 aaKnown RBP9.4□□□□□ -0.9
USP4-211ENST00000485450 HDAC5Q9UQL6 1122 aa9.4□□□□□ -0.9
USP4-211ENST00000485450 DDX60LQ5H9U9 1706 aaKnown RBP9.4□□□□□ -0.9
USP4-211ENST00000485450 KIF16BQ96L93 1317 aa9.4□□□□□ -0.91
USP4-211ENST00000485450 ZC3H4Q9UPT8 1303 aaKnown RBP9.4□□□□□ -0.91
USP4-211ENST00000485450 CCDC173Q0VFZ6 552 aa9.4□□□□□ -0.91
USP4-211ENST00000485450 FLIIQ13045 1269 aa9.4□□□□□ -0.91
USP4-211ENST00000485450 ATP2B3Q16720 1220 aa9.4□□□□□ -0.91
USP4-211ENST00000485450 RFC4P35249 363 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 ZBTB38Q8NAP3 1195 aaPredicted RBP9.39□□□□□ -0.91
USP4-211ENST00000485450 XAGE3Q8WTP9 111 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 TBC1D2Q9BYX2 928 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 DDX11L8A8MPP1 907 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 NEURL1BA8MQ27 555 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 DYNC1I1O14576 645 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 SEC24BO95487 1268 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 ANKRD13DQ6ZTN6 518 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 SSH1Q8WYL5 1049 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.39□□□□□ -0.91
USP4-211ENST00000485450 ZNF710Q8N1W2 664 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 LINS1Q8NG48 757 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 CRAMP1Q96RY5 1269 aa9.39□□□□□ -0.91
USP4-211ENST00000485450 PHAXQ9H814 394 aaKnown RBP9.39□□□□□ -0.91
USP4-211ENST00000485450 CAPN2P17655 700 aa9.38□□□□□ -0.91
USP4-211ENST00000485450 COPS6Q7L5N1 327 aa9.38□□□□□ -0.91
USP4-211ENST00000485450 HSP90B1P14625 803 aaKnown RBP9.38□□□□□ -0.91
USP4-211ENST00000485450 G2E3Q7L622 706 aa9.38□□□□□ -0.91
USP4-211ENST00000485450 CHMP5Q9NZZ3 219 aa9.38□□□□□ -0.91
USP4-211ENST00000485450 SRGNP10124 158 aa9.38□□□□□ -0.91
USP4-211ENST00000485450 SUSD4Q5VX71 490 aa9.38□□□□□ -0.91
USP4-211ENST00000485450 FAM43BQ6ZT52 329 aaPredicted RBP9.38□□□□□ -0.91
USP4-211ENST00000485450 C15orf52Q6ZUT6 534 aaKnown RBP9.38□□□□□ -0.91
USP4-211ENST00000485450 AKAP11Q9UKA4 1901 aa9.37□□□□□ -0.91
USP4-211ENST00000485450 KIF6Q6ZMV9 814 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms