RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 LRRC2Q9BYS8 371 aa16.58■□□□□ 0.24
SCAF4-202ENST00000399804 AOX1Q06278 1338 aa16.58■□□□□ 0.24
SCAF4-202ENST00000399804 CCDC69A6NI79 296 aa16.57■□□□□ 0.24
SCAF4-202ENST00000399804 SLC3A2P08195 630 aaKnown RBP16.57■□□□□ 0.24
SCAF4-202ENST00000399804 CPA1P15085 419 aa16.57■□□□□ 0.24
SCAF4-202ENST00000399804 CCT2P78371 535 aaKnown RBP16.57■□□□□ 0.24
SCAF4-202ENST00000399804 TTF1Q15361 905 aaPredicted RBP16.57■□□□□ 0.24
SCAF4-202ENST00000399804 FAM227BQ96M60 508 aa16.57■□□□□ 0.24
SCAF4-202ENST00000399804 PPFIA3O75145 1194 aa16.57■□□□□ 0.24
SCAF4-202ENST00000399804 ITGA6P23229 1130 aa16.57■□□□□ 0.24
SCAF4-202ENST00000399804 TRIM34Q9BYJ4 488 aa16.57■□□□□ 0.24
SCAF4-202ENST00000399804 MYO5BQ9ULV0 1848 aa16.57■□□□□ 0.24
SCAF4-202ENST00000399804 UQCRFS1P1P0C7P4 283 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 EDC3Q96F86 508 aaKnown RBP16.56■□□□□ 0.24
SCAF4-202ENST00000399804 UBAC1Q9BSL1 405 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 ERBB4Q15303 1308 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 GJB2P29033 226 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 SLC9C2Q5TAH2 1124 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 ANKRD18AQ8IVF6 992 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 SH3TC1Q8TE82 1336 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 RIMS1Q86UR5 1692 aaKnown RBP16.56■□□□□ 0.24
SCAF4-202ENST00000399804 CREB3L3Q68CJ9 461 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 BRF1Q92994 677 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 NLRP3Q96P20 1036 aa16.56■□□□□ 0.24
SCAF4-202ENST00000399804 STK38Q15208 465 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 STX6O43752 255 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 MARCH6O60337 910 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 ZFYP08048 801 aaPredicted RBP16.55■□□□□ 0.24
SCAF4-202ENST00000399804 TNS3Q68CZ2 1445 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 CCDC171Q6TFL3 1326 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 ZNF396Q96N95 335 aaPredicted RBP16.55■□□□□ 0.24
SCAF4-202ENST00000399804 UNC5CLQ8IV45 518 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 SPATA32Q96LK8 384 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 GRPEL1Q9HAV7 217 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 CCDC87Q9NVE4 849 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 XBP1P17861 261 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 AK2P54819 239 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 TRIM22Q8IYM9 498 aa16.55■□□□□ 0.24
SCAF4-202ENST00000399804 COL3A1P02461 1466 aaPredicted RBP16.54■□□□□ 0.24
SCAF4-202ENST00000399804 CREBRFQ8IUR6 639 aa16.54■□□□□ 0.24
SCAF4-202ENST00000399804 ME1P48163 572 aa16.54■□□□□ 0.24
SCAF4-202ENST00000399804 GUCY1B3Q02153 619 aa16.54■□□□□ 0.24
SCAF4-202ENST00000399804 RTCBQ9Y3I0 505 aaKnown RBP16.54■□□□□ 0.24
SCAF4-202ENST00000399804 MYOM1P52179 1685 aa16.54■□□□□ 0.24
SCAF4-202ENST00000399804 KLHL34Q8N239 644 aa16.53■□□□□ 0.24
SCAF4-202ENST00000399804 OSBPL3Q9H4L5 887 aa16.53■□□□□ 0.24
SCAF4-202ENST00000399804 KINO60870 393 aaKnown RBP16.53■□□□□ 0.24
SCAF4-202ENST00000399804 PDIA4P13667 645 aaKnown RBP16.53■□□□□ 0.24
SCAF4-202ENST00000399804 CCDC129Q6ZRS4 1044 aa16.53■□□□□ 0.24
SCAF4-202ENST00000399804 PIGBQ92521 554 aa16.53■□□□□ 0.24
SCAF4-202ENST00000399804 RPGRQ92834 1020 aaKnown RBP16.53■□□□□ 0.24
SCAF4-202ENST00000399804 TSPY26PQ9H489 355 aa16.53■□□□□ 0.24
SCAF4-202ENST00000399804 STAP2Q9UGK3 403 aa16.53■□□□□ 0.24
SCAF4-202ENST00000399804 GNPATO15228 680 aa16.52■□□□□ 0.24
SCAF4-202ENST00000399804 RNF113AO15541 343 aaKnown RBP16.52■□□□□ 0.24
SCAF4-202ENST00000399804 ARHGAP23Q9P227 1491 aa16.52■□□□□ 0.24
SCAF4-202ENST00000399804 PDE8AO60658 829 aa16.52■□□□□ 0.24
SCAF4-202ENST00000399804 RAB11FIP4Q86YS3 637 aa16.52■□□□□ 0.24
SCAF4-202ENST00000399804 SYCE3A1L190 88 aa16.52■□□□□ 0.23
SCAF4-202ENST00000399804 CCDC82Q8N4S0 544 aa16.52■□□□□ 0.23
SCAF4-202ENST00000399804 ZBTB1Q9Y2K1 713 aa16.52■□□□□ 0.23
SCAF4-202ENST00000399804 HEG1Q9ULI3 1381 aa16.52■□□□□ 0.23
SCAF4-202ENST00000399804 MAP2P11137 1827 aaKnown RBP16.52■□□□□ 0.23
SCAF4-202ENST00000399804 XAGE2Q96GT9 111 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 NCAPD2Q15021 1401 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 SLIT1O75093 1534 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 CDKL5O76039 1030 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 TPTE2Q6XPS3 522 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 DZIP1Q86YF9 867 aaKnown RBP16.51■□□□□ 0.23
SCAF4-202ENST00000399804 COPRSQ9NQ92 184 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 TFIP11Q9UBB9 837 aaKnown RBP16.51■□□□□ 0.23
SCAF4-202ENST00000399804 CFAP45Q9UL16 551 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 IGKV5-2P06315 115 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 RAB3GAP1Q15042 981 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 RAD50Q92878 1312 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 GOLGA8BA8MQT2 603 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 LETM1O95202 739 aaPredicted RBP16.51■□□□□ 0.23
SCAF4-202ENST00000399804 USP21Q9UK80 565 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 SNX14Q9Y5W7 946 aa16.51■□□□□ 0.23
SCAF4-202ENST00000399804 PARP10Q53GL7 1025 aa16.5■□□□□ 0.23
SCAF4-202ENST00000399804 BRMS1Q9HCU9 246 aa16.5■□□□□ 0.23
SCAF4-202ENST00000399804 CCNL1Q9UK58 526 aaPredicted RBP16.5■□□□□ 0.23
SCAF4-202ENST00000399804 IFIT3O14879 490 aaKnown RBP16.5■□□□□ 0.23
SCAF4-202ENST00000399804 LRRC24Q50LG9 513 aa16.5■□□□□ 0.23
SCAF4-202ENST00000399804 USP32Q8NFA0 1604 aa16.5■□□□□ 0.23
SCAF4-202ENST00000399804 ATP5JP18859 108 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 HMGN5P82970 282 aaKnown RBP16.49■□□□□ 0.23
SCAF4-202ENST00000399804 VPS53Q5VIR6 699 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 Q6ZUG5 572 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 CHST3Q7LGC8 479 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 KBTBD3Q8NAB2 608 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 NCOA7Q8NI08 942 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 PALD1Q9ULE6 856 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 FER1L4A9Z1Z3 1794 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 C6orf229H3BNL8 230 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 POLA2Q14181 598 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 LOC102724428A0A0B4J2F2 783 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 RANBP6O60518 1105 aaKnown RBP16.49■□□□□ 0.23
SCAF4-202ENST00000399804 SIK1P57059 783 aa16.49■□□□□ 0.23
SCAF4-202ENST00000399804 TNMDQ9H2S6 317 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms